Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 1 | 4 | 5.74 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CIEGKOPM_34 | 89761 | 90813 | clbC | ARO:3002816 | clbC | 97.14 | 100.00 | AP006627.1 |
| CIEGKOPM_82 | 23692 | 24462 | ANT(4')-Ib | ARO:3003905 | ANT(4')-Ib | 94.14 | 100.00 | EF540343.1 |
| CIEGKOPM_114 | 1695 | 2540 | Erm(34) | ARO:3000600 | Erm(34) | 98.58 | 100.00 | AY234334.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CIEGKOPM_114 | 1695 | 2540 | erm(34) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.87 | 100.00 | AY234334 |
| CIEGKOPM_82 | 23692 | 24462 | ant(4')-Ib | Amikacin, Tobramycin, Isepamicin, Dibekacin | 94.16 | 100.00 | AJ506108 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CIEGKOPM_114 | 1698 | 2540 | erm(34) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(34) | BLASTX | 98.58 | 100.00 | WP_063844504.1 |
| CIEGKOPM_34 | 89764 | 90813 | clbB | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbB | BLASTX | 97.14 | 100.00 | WP_011245929.1 |
| CIEGKOPM_82 | 26876 | 27778 | blaBCL | BCL family class A beta-lactamase | BLASTX | 96.68 | 100.00 | WP_065825670.1 |
| CIEGKOPM_82 | 23692 | 24459 | aadD2 | aminoglycoside O-nucleotidyltransferase ANT(4')-Ib | BLASTX | 94.14 | 100.00 | WP_035202393.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| CIEGKOPM_92 | 22732 | 23382 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 96.77 | 100.00 | WP_011247375 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CIEGKOPM_73 | 39424 | 38282 | tufA | 0.0 | elongation factor Tu | 87.14 | 96.19 | AHM69299 |
| CIEGKOPM_91 | 16226 | 15984 | SpoVG | 1.70e-37 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| CIEGKOPM_125 | 1604 | 1801 | CspA | 1.45e-31 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| CIEGKOPM_98 | 25404 | 25592 | CspB | 5.47e-26 | cold shock protein | 82.54 | 95.45 | CAD00094 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CIEGKOPM_1 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_2 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_3 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_7 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_8 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_9 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_10 | 1.0 | 0.0 | 1.0 |
| CIEGKOPM_11 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_12 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_13 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_14 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_15 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_16 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_17 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_18 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_19 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_20 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_21 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_22 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_23 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_24 | 1.0 | 0.0 | 1.0 |
| CIEGKOPM_25 | 1.0 | 0.0 | 1.0 |
| CIEGKOPM_26 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_27 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_28 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_29 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_30 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_31 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_33 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_34 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_35 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_36 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_37 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_38 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_40 | 1.0 | 0.0 | 1.0 |
| CIEGKOPM_42 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_43 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_46 | 1.0 | 0.0 | 1.0 |
| CIEGKOPM_47 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_48 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_49 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_50 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_51 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_52 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_53 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_55 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_56 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_57 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_58 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_59 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_60 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_61 | 1.0 | 0.0 | 1.0 |
| CIEGKOPM_62 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_63 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_64 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_65 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_66 | 1.0 | 0.0 | 1.0 |
| CIEGKOPM_67 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_68 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_69 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_70 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_71 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_72 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_73 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_74 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_75 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_76 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_77 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_78 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_79 | 1.0 | 0.0 | 1.0 |
| CIEGKOPM_80 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_81 | 1.0 | 0.0 | 1.0 |
| CIEGKOPM_82 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_83 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_84 | 1.0 | 0.0 | 1.0 |
| CIEGKOPM_85 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_86 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_88 | 1.0 | 0.0 | 1.0 |
| CIEGKOPM_89 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_90 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_91 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_92 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_93 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_94 | 1.0 | 0.0 | 1.0 |
| CIEGKOPM_95 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_96 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_97 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_98 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_99 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_100 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_101 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_102 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_103 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_104 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_105 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_106 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_107 | 1.0 | 0.0 | 1.0 |
| CIEGKOPM_108 | 1.0 | 0.0 | 1.0 |
| CIEGKOPM_109 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_110 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_111 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_112 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_113 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_114 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_115 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_116 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_117 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_118 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_119 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_120 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_121 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_122 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_123 | 1.0 | 0.0 | 1.0 |
| CIEGKOPM_124 | 1.0 | 0.0 | 1.0 |
| CIEGKOPM_125 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_126 | 1.0 | 0.0 | 1.0 |
| CIEGKOPM_127 | 1.0 | 0.0 | 1.0 |
| CIEGKOPM_129 | 1.0 | 0.0 | 1.0 |
| CIEGKOPM_130 | 1.0 | 0.0 | 1.0 |
| CIEGKOPM_131 | 0.0 | 1.0 | 0.0 |
| CIEGKOPM_133 | 1.0 | 0.0 | 1.0 |
| CIEGKOPM_134 | 1.0 | 0.0 | 1.0 |
| CIEGKOPM_135 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CIEGKOPM_11 | 9747 | 36221 | False | Siphoviridae | VOG4552, VOG6242, VOG5447, VOG6780, VOG5361, VOG0796, VOG4544, VOG0720, VOG4564, VOG4555, VOG3434, VOG1887, VOG4623, VOG0816, VOG5660, VOG0724, VOG0799, VOG0725, VOG6163, VOG0801, VOG4619, VOG0565, VOG4669, VOG0753, VOG0602 |
Phigaro v2.4.0 (Database: Jan. 2024 release)