Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 1 | 4 | 6.48 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JIDDHEBC_37 | 82282 | 83206 | BCL-1 | ARO:3004749 | BCL-1 | 100.00 | 98.05 | EF540343.1 |
| JIDDHEBC_15 | 81387 | 82232 | Erm(34) | ARO:3000600 | Erm(34) | 96.80 | 100.00 | AY234334.1 |
| JIDDHEBC_37 | 79116 | 79886 | ANT(4')-Ib | ARO:3003905 | ANT(4')-Ib | 99.22 | 100.00 | EF540343.1 |
| JIDDHEBC_7 | 55007 | 55654 | Alkalihalobacillus clausii chloramphenicol acetyltransferase | ARO:3004452 | Acla_ACT_CHL | 88.68 | 94.30 | AY238971.1 |
| JIDDHEBC_34 | 14120 | 15172 | clbC | ARO:3002816 | clbC | 99.43 | 100.00 | AP006627.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JIDDHEBC_37 | 79116 | 79886 | ant(4')-Ib | Amikacin, Tobramycin, Isepamicin, Dibekacin | 99.09 | 100.00 | AJ506108 |
| JIDDHEBC_7 | 54976 | 55652 | cat | Chloramphenicol | 97.52 | 98.40 | AY238971 |
| JIDDHEBC_15 | 81387 | 82219 | erm(34) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 96.04 | 98.46 | AY234334 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JIDDHEBC_37 | 82300 | 83202 | blaBCL-1 | class A beta-lactamase BCL-1 | ALLELEX | 100.00 | 100.00 | WP_065825670.1 |
| JIDDHEBC_7 | 55010 | 55654 | catA | type A-10 chloramphenicol O-acetyltransferase | EXACTX | 100.00 | 100.00 | WP_035203840.1 |
| JIDDHEBC_34 | 14123 | 15172 | clbB | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbB | BLASTX | 99.43 | 100.00 | WP_011245929.1 |
| JIDDHEBC_37 | 79116 | 79883 | aadD2 | aminoglycoside O-nucleotidyltransferase ANT(4')-Ib | BLASTX | 99.22 | 100.00 | WP_035202393.1 |
| JIDDHEBC_15 | 81387 | 82226 | erm(34) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(34) | BLASTX | 97.14 | 99.64 | WP_063844504.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| JIDDHEBC_9 | 133765 | 134415 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.85 | 100.00 | WP_011247375 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JIDDHEBC_54 | 32539 | 33675 | tufA | 0.0 | elongation factor Tu | 87.33 | 95.69 | AHM69299 |
| JIDDHEBC_50 | 3264 | 3506 | SpoVG | 1.48e-37 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| JIDDHEBC_40 | 29790 | 29596 | CspA | 1.77e-30 | cold shock protein | 86.15 | 98.48 | CAA62903 |
| JIDDHEBC_19 | 244405 | 244214 | msaB | 7.37e-26 | cold shock protein | 81.25 | 96.97 | ABD22065 |
| JIDDHEBC_19 | 244402 | 244214 | CspB | 6.33e-25 | cold shock protein | 80.95 | 95.45 | CAD00094 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JIDDHEBC_1 | 0.0 | 1.0 | 0.0 |
| JIDDHEBC_2 | 0.0 | 1.0 | 0.0 |
| JIDDHEBC_3 | 0.0 | 1.0 | 0.0 |
| JIDDHEBC_4 | 0.0 | 1.0 | 0.0 |
| JIDDHEBC_5 | 0.0 | 1.0 | 0.0 |
| JIDDHEBC_6 | 0.0 | 1.0 | 0.0 |
| JIDDHEBC_7 | 0.0 | 1.0 | 0.0 |
| JIDDHEBC_8 | 0.0 | 1.0 | 0.0 |
| JIDDHEBC_9 | 0.0 | 1.0 | 0.0 |
| JIDDHEBC_10 | 0.0 | 1.0 | 0.0 |
| JIDDHEBC_11 | 0.0 | 1.0 | 0.0 |
| JIDDHEBC_12 | 0.0 | 1.0 | 0.0 |
| JIDDHEBC_13 | 0.0 | 1.0 | 0.0 |
| JIDDHEBC_14 | 0.0 | 1.0 | 0.0 |
| JIDDHEBC_15 | 0.0 | 1.0 | 0.0 |
| JIDDHEBC_16 | 0.0 | 1.0 | 0.0 |
| JIDDHEBC_17 | 0.0 | 1.0 | 0.0 |
| JIDDHEBC_18 | 0.0 | 1.0 | 0.0 |
| JIDDHEBC_19 | 0.0 | 1.0 | 0.0 |
| JIDDHEBC_20 | 0.0 | 1.0 | 0.0 |
| JIDDHEBC_22 | 0.0 | 1.0 | 0.0 |
| JIDDHEBC_23 | 1.0 | 0.0 | 1.0 |
| JIDDHEBC_25 | 0.0 | 1.0 | 0.0 |
| JIDDHEBC_26 | 1.0 | 0.0 | 1.0 |
| JIDDHEBC_27 | 1.0 | 0.0 | 1.0 |
| JIDDHEBC_28 | 1.0 | 0.0 | 1.0 |
| JIDDHEBC_29 | 0.0 | 1.0 | 0.0 |
| JIDDHEBC_30 | 0.0 | 1.0 | 0.0 |
| JIDDHEBC_31 | 1.0 | 0.0 | 1.0 |
| JIDDHEBC_32 | 1.0 | 0.0 | 1.0 |
| JIDDHEBC_33 | 0.0 | 1.0 | 0.0 |
| JIDDHEBC_34 | 0.0 | 1.0 | 0.0 |
| JIDDHEBC_35 | 1.0 | 0.0 | 1.0 |
| JIDDHEBC_36 | 1.0 | 0.0 | 1.0 |
| JIDDHEBC_37 | 0.0 | 1.0 | 0.0 |
| JIDDHEBC_38 | 1.0 | 0.0 | 1.0 |
| JIDDHEBC_39 | 0.0 | 1.0 | 0.0 |
| JIDDHEBC_40 | 0.0 | 1.0 | 0.0 |
| JIDDHEBC_41 | 0.0 | 1.0 | 0.0 |
| JIDDHEBC_42 | 1.0 | 0.0 | 1.0 |
| JIDDHEBC_43 | 0.0 | 1.0 | 0.0 |
| JIDDHEBC_44 | 0.0 | 1.0 | 0.0 |
| JIDDHEBC_45 | 0.0 | 1.0 | 0.0 |
| JIDDHEBC_47 | 0.0 | 1.0 | 0.0 |
| JIDDHEBC_48 | 1.0 | 0.0 | 1.0 |
| JIDDHEBC_49 | 0.0 | 1.0 | 0.0 |
| JIDDHEBC_50 | 0.0 | 1.0 | 0.0 |
| JIDDHEBC_51 | 0.0 | 1.0 | 0.0 |
| JIDDHEBC_53 | 1.0 | 0.0 | 1.0 |
| JIDDHEBC_54 | 0.0 | 1.0 | 0.0 |
| JIDDHEBC_55 | 0.0 | 1.0 | 0.0 |
| JIDDHEBC_56 | 0.0 | 1.0 | 0.0 |
| JIDDHEBC_57 | 0.0 | 1.0 | 0.0 |
| JIDDHEBC_58 | 0.0 | 1.0 | 0.0 |
| JIDDHEBC_59 | 0.0 | 1.0 | 0.0 |
| JIDDHEBC_60 | 1.0 | 0.0 | 1.0 |
| JIDDHEBC_61 | 1.0 | 0.0 | 1.0 |
| JIDDHEBC_62 | 0.0 | 1.0 | 0.0 |
| JIDDHEBC_63 | 0.0 | 1.0 | 0.0 |
| JIDDHEBC_64 | 0.0 | 1.0 | 0.0 |
| JIDDHEBC_65 | 0.0 | 1.0 | 0.0 |
| JIDDHEBC_66 | 0.0 | 1.0 | 0.0 |
| JIDDHEBC_67 | 1.0 | 0.0 | 1.0 |
| JIDDHEBC_68 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JIDDHEBC_25 | 7599 | 25314 | False | Siphoviridae | VOG10470, VOG8236, VOG0136, VOG0217, VOG4619, VOG4705, VOG3390, VOG5384, VOG4660, VOG0801, VOG6163 |
| JIDDHEBC_25 | 41426 | 53343 | False | Unknown | VOG0226, VOG4567, VOG1884, VOG0025, VOG9600, VOG2664, VOG4552, VOG11003, VOG4561, VOG7719, VOG5324, VOG0044, VOG6581, VOG0756, VOG0650 |
Phigaro v2.4.0 (Database: Jan. 2024 release)