Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 1 | 4 | 5.10 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CJOOGFEF_32 | 32825 | 33670 | Erm(34) | ARO:3000600 | Erm(34) | 98.58 | 100.00 | AY234334.1 |
| CJOOGFEF_7 | 4051 | 4821 | ANT(4')-Ib | ARO:3003905 | ANT(4')-Ib | 94.14 | 100.00 | EF540343.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CJOOGFEF_32 | 32825 | 33670 | erm(34) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.87 | 100.00 | AY234334 |
| CJOOGFEF_7 | 4051 | 4821 | ant(4')-Ib | Amikacin, Tobramycin, Isepamicin, Dibekacin | 94.16 | 100.00 | AJ506108 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CJOOGFEF_32 | 32825 | 33667 | erm(34) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(34) | BLASTX | 98.58 | 100.00 | WP_063844504.1 |
| CJOOGFEF_7 | 735 | 1637 | blaBCL | BCL family class A beta-lactamase | BLASTX | 96.68 | 100.00 | WP_065825670.1 |
| CJOOGFEF_7 | 4054 | 4821 | aadD2 | aminoglycoside O-nucleotidyltransferase ANT(4')-Ib | BLASTX | 94.14 | 100.00 | WP_035202393.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| CJOOGFEF_68 | 2548 | 3198 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 97.39 | 100.00 | WP_011247375 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CJOOGFEF_76 | 37193 | 36051 | tufA | 0.0 | elongation factor Tu | 87.14 | 96.19 | AHM69299 |
| CJOOGFEF_71 | 35829 | 36071 | SpoVG | 2.54e-37 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| CJOOGFEF_150 | 1604 | 1801 | CspA | 1.44e-31 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| CJOOGFEF_122 | 12219 | 12407 | CspB | 2.90e-26 | cold shock protein | 82.54 | 95.45 | CAD00094 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CJOOGFEF_1 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_2 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_3 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_4 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_5 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_6 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_7 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_8 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_9 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_10 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_11 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_12 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_13 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_14 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_15 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_16 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_17 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_18 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_19 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_20 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_21 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_22 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_23 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_24 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_25 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_26 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_27 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_28 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_29 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_30 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_31 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_32 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_33 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_34 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_35 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_36 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_37 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_38 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_39 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_40 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_41 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_42 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_43 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_44 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_45 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_46 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_48 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_49 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_50 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_51 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_54 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_55 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_56 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_57 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_58 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_59 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_60 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_61 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_62 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_63 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_64 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_65 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_66 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_67 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_68 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_69 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_70 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_71 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_72 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_73 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_74 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_75 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_76 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_77 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_78 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_79 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_80 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_81 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_82 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_83 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_84 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_85 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_86 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_87 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_88 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_89 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_90 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_91 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_92 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_93 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_94 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_95 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_96 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_97 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_98 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_99 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_100 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_101 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_102 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_103 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_104 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_105 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_106 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_107 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_108 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_109 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_110 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_111 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_112 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_113 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_114 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_115 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_116 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_117 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_118 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_119 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_120 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_121 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_122 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_123 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_124 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_125 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_126 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_127 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_128 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_129 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_130 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_132 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_133 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_135 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_136 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_137 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_138 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_141 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_142 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_143 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_144 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_145 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_146 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_147 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_148 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_149 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_150 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_151 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_152 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_153 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_154 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_155 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_156 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_157 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_158 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_159 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_160 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_161 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_162 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_164 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_165 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_167 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_168 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_169 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_172 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_173 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_174 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_175 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_176 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_179 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_182 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_183 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_184 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_185 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_186 | 0.0 | 1.0 | 0.0 |
| CJOOGFEF_187 | 1.0 | 0.0 | 1.0 |
| CJOOGFEF_188 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CJOOGFEF_111 | 2829 | 39821 | False | Siphoviridae | VOG4841, VOG4581, VOG4544, VOG4556, VOG4573, VOG4553, VOG1322, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG4910, VOG0801, VOG4660, VOG5384, VOG3390, VOG4705, VOG4619, VOG0641, VOG8236, VOG7068, VOG0018, VOG6116, VOG0866, VOG1561, VOG4602, VOG9667, VOG6495, VOG4552, VOG0468, VOG6414, VOG6931, VOG0535, VOG1936 |
Phigaro v2.4.0 (Database: Jan. 2024 release)