Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 1 | 4 | 5.74 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KKGBGPNG_100 | 18596 | 19648 | clbC | ARO:3002816 | clbC | 97.14 | 100.00 | AP006627.1 |
| KKGBGPNG_31 | 4094 | 4864 | ANT(4')-Ib | ARO:3003905 | ANT(4')-Ib | 93.75 | 100.00 | EF540343.1 |
| KKGBGPNG_87 | 553 | 1398 | Erm(34) | ARO:3000600 | Erm(34) | 100.00 | 100.00 | AY234334.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KKGBGPNG_87 | 553 | 1398 | erm(34) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | AY234334 |
| KKGBGPNG_31 | 4094 | 4864 | ant(4')-Ib | Amikacin, Tobramycin, Isepamicin, Dibekacin | 94.29 | 100.00 | AJ506108 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KKGBGPNG_87 | 556 | 1398 | erm(34) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(34) | EXACTX | 100.00 | 100.00 | WP_063844504.1 |
| KKGBGPNG_31 | 778 | 1680 | blaBCL | BCL family class A beta-lactamase | BLASTX | 97.34 | 100.00 | WP_065825670.1 |
| KKGBGPNG_100 | 18599 | 19648 | clbB | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbB | BLASTX | 97.14 | 100.00 | WP_011245929.1 |
| KKGBGPNG_31 | 4097 | 4864 | aadD2 | aminoglycoside O-nucleotidyltransferase ANT(4')-Ib | BLASTX | 93.75 | 100.00 | WP_035202393.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| KKGBGPNG_6 | 120722 | 121372 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 97.39 | 100.00 | WP_011247375 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KKGBGPNG_80 | 37192 | 36056 | tufA | 0.0 | elongation factor Tu | 87.33 | 95.69 | AHM69299 |
| KKGBGPNG_71 | 3296 | 3538 | SpoVG | 1.02e-37 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| KKGBGPNG_99 | 29449 | 29252 | CspA | 5.82e-31 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| KKGBGPNG_77 | 25183 | 25371 | CspB | 5.45e-26 | cold shock protein | 82.54 | 95.45 | CAD00094 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KKGBGPNG_1 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_2 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_3 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_4 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_5 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_6 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_7 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_8 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_9 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_10 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_11 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_12 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_13 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_14 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_16 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_18 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_19 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_20 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_21 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_22 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_23 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_24 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_26 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_27 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_28 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_29 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_30 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_31 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_32 | 1.0 | 0.0 | 1.0 |
| KKGBGPNG_33 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_34 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_35 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_37 | 1.0 | 0.0 | 1.0 |
| KKGBGPNG_38 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_39 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_40 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_41 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_42 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_43 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_44 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_45 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_46 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_47 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_48 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_49 | 1.0 | 0.0 | 1.0 |
| KKGBGPNG_50 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_51 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_52 | 1.0 | 0.0 | 1.0 |
| KKGBGPNG_53 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_54 | 1.0 | 0.0 | 1.0 |
| KKGBGPNG_55 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_56 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_57 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_58 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_59 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_60 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_61 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_62 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_63 | 1.0 | 0.0 | 1.0 |
| KKGBGPNG_64 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_65 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_66 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_67 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_68 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_69 | 1.0 | 0.0 | 1.0 |
| KKGBGPNG_70 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_71 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_72 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_73 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_74 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_75 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_76 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_77 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_78 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_79 | 1.0 | 0.0 | 1.0 |
| KKGBGPNG_80 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_81 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_82 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_83 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_84 | 1.0 | 0.0 | 1.0 |
| KKGBGPNG_85 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_86 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_87 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_89 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_90 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_91 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_92 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_93 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_94 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_95 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_96 | 1.0 | 0.0 | 1.0 |
| KKGBGPNG_97 | 1.0 | 0.0 | 1.0 |
| KKGBGPNG_98 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_99 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_100 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_101 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_102 | 1.0 | 0.0 | 1.0 |
| KKGBGPNG_103 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_104 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_106 | 1.0 | 0.0 | 1.0 |
| KKGBGPNG_107 | 1.0 | 0.0 | 1.0 |
| KKGBGPNG_109 | 1.0 | 0.0 | 1.0 |
| KKGBGPNG_110 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_111 | 1.0 | 0.0 | 1.0 |
| KKGBGPNG_112 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_113 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_114 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_115 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_116 | 1.0 | 0.0 | 1.0 |
| KKGBGPNG_117 | 1.0 | 0.0 | 1.0 |
| KKGBGPNG_118 | 1.0 | 0.0 | 1.0 |
| KKGBGPNG_119 | 1.0 | 0.0 | 1.0 |
| KKGBGPNG_121 | 1.0 | 0.0 | 1.0 |
| KKGBGPNG_122 | 1.0 | 0.0 | 1.0 |
| KKGBGPNG_123 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_124 | 1.0 | 0.0 | 1.0 |
| KKGBGPNG_125 | 1.0 | 0.0 | 1.0 |
| KKGBGPNG_126 | 0.0 | 1.0 | 0.0 |
| KKGBGPNG_127 | 1.0 | 0.0 | 1.0 |
| KKGBGPNG_128 | 1.0 | 0.0 | 1.0 |
| KKGBGPNG_129 | 1.0 | 0.0 | 1.0 |
| KKGBGPNG_130 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KKGBGPNG_50 | 9113 | 39795 | False | Siphoviridae | VOG4566, VOG9600, VOG0025, VOG1884, VOG0052, VOG1129, VOG0226, VOG0397, VOG4693, VOG0198, VOG5924, VOG5361, VOG0796, VOG0720, VOG4564, VOG4555, VOG3434, VOG1887, VOG4623, VOG0816, VOG5660, VOG0724, VOG0799, VOG0725, VOG6163, VOG0801, VOG4619, VOG10080, VOG0641, VOG8236 |
Phigaro v2.4.0 (Database: Jan. 2024 release)