Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 2 | 3.61 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PMCCECLB_37 | 98360 | 98854 | lnuC | ARO:3002837 | lnuC | 98.17 | 100.00 | AY928180.1 |
| PMCCECLB_83 | 4837 | 6762 | tet(M) | ARO:3000186 | tet(M) | 99.06 | 100.31 | AB039845.1 |
| PMCCECLB_102 | 940 | 1677 | ErmB | ARO:3000375 | ErmB | 99.18 | 98.79 | AF242872.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PMCCECLB_102 | 940 | 1677 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | X72021 |
| PMCCECLB_83 | 4837 | 6762 | tet(M) | Doxycycline, Tetracycline, Minocycline | 99.58 | 100.00 | X75073 |
| PMCCECLB_37 | 98360 | 98854 | lnu(C) | Lincomycin | 98.79 | 100.00 | AY928180 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PMCCECLB_102 | 943 | 1677 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | EXACTX | 100.00 | 100.00 | WP_001038795.1 |
| PMCCECLB_83 | 4837 | 6759 | tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 99.69 | 100.00 | WP_000691727.1 |
| PMCCECLB_37 | 98360 | 98851 | lnu(C) | lincosamide nucleotidyltransferase Lnu(C) | BLASTX | 98.17 | 100.00 | WP_063851341.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PMCCECLB_114 | 20618 | 19911 | WalR | 1.80e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| PMCCECLB_19 | 7676 | 7873 | CspR | 6.24e-29 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| PMCCECLB_19 | 7676 | 7870 | CspA | 3.04e-28 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PMCCECLB_1 | 1.0 | 0.0 | 1.0 |
| PMCCECLB_2 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_3 | 1.0 | 0.0 | 1.0 |
| PMCCECLB_4 | 1.0 | 0.0 | 1.0 |
| PMCCECLB_5 | 1.0 | 0.0 | 1.0 |
| PMCCECLB_6 | 1.0 | 0.0 | 1.0 |
| PMCCECLB_11 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_17 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_18 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_19 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_20 | 1.0 | 0.0 | 1.0 |
| PMCCECLB_21 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_22 | 1.0 | 0.0 | 1.0 |
| PMCCECLB_23 | 1.0 | 0.0 | 1.0 |
| PMCCECLB_24 | 1.0 | 0.0 | 1.0 |
| PMCCECLB_25 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_26 | 1.0 | 0.0 | 1.0 |
| PMCCECLB_27 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_28 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_29 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_30 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_31 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_32 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_33 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_34 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_35 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_36 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_37 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_38 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_39 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_40 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_41 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_42 | 1.0 | 0.0 | 1.0 |
| PMCCECLB_43 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_44 | 1.0 | 0.0 | 1.0 |
| PMCCECLB_45 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_46 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_47 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_48 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_49 | 1.0 | 0.0 | 1.0 |
| PMCCECLB_50 | 1.0 | 0.0 | 1.0 |
| PMCCECLB_51 | 1.0 | 0.0 | 1.0 |
| PMCCECLB_52 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_53 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_54 | 1.0 | 0.0 | 1.0 |
| PMCCECLB_55 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_56 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_57 | 1.0 | 0.0 | 1.0 |
| PMCCECLB_58 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_59 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_60 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_61 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_62 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_63 | 1.0 | 0.0 | 1.0 |
| PMCCECLB_64 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_65 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_66 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_67 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_68 | 1.0 | 0.0 | 1.0 |
| PMCCECLB_69 | 1.0 | 0.0 | 1.0 |
| PMCCECLB_70 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_71 | 1.0 | 0.0 | 1.0 |
| PMCCECLB_72 | 1.0 | 0.0 | 1.0 |
| PMCCECLB_73 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_74 | 1.0 | 0.0 | 1.0 |
| PMCCECLB_75 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_76 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_77 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_78 | 1.0 | 0.0 | 1.0 |
| PMCCECLB_79 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_80 | 1.0 | 0.0 | 1.0 |
| PMCCECLB_81 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_82 | 1.0 | 0.0 | 1.0 |
| PMCCECLB_83 | 1.0 | 0.0 | 1.0 |
| PMCCECLB_84 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_85 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_86 | 1.0 | 0.0 | 1.0 |
| PMCCECLB_87 | 1.0 | 0.0 | 1.0 |
| PMCCECLB_88 | 1.0 | 0.0 | 1.0 |
| PMCCECLB_89 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_90 | 1.0 | 0.0 | 1.0 |
| PMCCECLB_91 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_92 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_93 | 1.0 | 0.0 | 1.0 |
| PMCCECLB_94 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_95 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_96 | 1.0 | 0.0 | 1.0 |
| PMCCECLB_97 | 1.0 | 0.0 | 1.0 |
| PMCCECLB_98 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_99 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_100 | 1.0 | 0.0 | 1.0 |
| PMCCECLB_101 | 1.0 | 0.0 | 1.0 |
| PMCCECLB_102 | 1.0 | 0.0 | 1.0 |
| PMCCECLB_103 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_104 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_105 | 1.0 | 0.0 | 1.0 |
| PMCCECLB_106 | 1.0 | 0.0 | 1.0 |
| PMCCECLB_107 | 1.0 | 0.0 | 1.0 |
| PMCCECLB_108 | 1.0 | 0.0 | 1.0 |
| PMCCECLB_109 | 0.0 | 1.0 | 0.0 |
| PMCCECLB_110 | 1.0 | 0.0 | 1.0 |
| PMCCECLB_111 | 1.0 | 0.0 | 1.0 |
| PMCCECLB_112 | 1.0 | 0.0 | 1.0 |
| PMCCECLB_113 | 1.0 | 0.0 | 1.0 |
| PMCCECLB_114 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PMCCECLB_24 | 24964 | 34802 | False | Siphoviridae | VOG8681, VOG0638, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG9583, VOG0207 |
| PMCCECLB_27 | 9806 | 27865 | False | Siphoviridae | VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG0637, VOG0198, VOG8681, VOG3699, VOG4544, VOG0691, VOG0692, VOG10527, VOG4555, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763 |
Phigaro v2.4.0 (Database: Jan. 2024 release)