Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 2 | 3.61 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DHDAFLJA_24 | 11634 | 12128 | lnuC | ARO:3002837 | lnuC | 98.17 | 100.00 | AY928180.1 |
| DHDAFLJA_48 | 8399 | 10324 | tet(M) | ARO:3000186 | tet(M) | 99.06 | 100.31 | AB039845.1 |
| DHDAFLJA_74 | 932 | 1669 | ErmB | ARO:3000375 | ErmB | 99.18 | 98.79 | AF242872.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DHDAFLJA_74 | 932 | 1669 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | X72021 |
| DHDAFLJA_48 | 8399 | 10324 | tet(M) | Doxycycline, Tetracycline, Minocycline | 99.58 | 100.00 | X75073 |
| DHDAFLJA_24 | 11634 | 12128 | lnu(C) | Lincomycin | 98.79 | 100.00 | AY928180 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DHDAFLJA_74 | 935 | 1669 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | EXACTX | 100.00 | 100.00 | WP_001038795.1 |
| DHDAFLJA_48 | 8399 | 10321 | tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 99.69 | 100.00 | WP_000691727.1 |
| DHDAFLJA_24 | 11637 | 12128 | lnu(C) | lincosamide nucleotidyltransferase Lnu(C) | BLASTX | 98.17 | 100.00 | WP_063851341.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DHDAFLJA_101 | 32385 | 33092 | WalR | 1.80e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| DHDAFLJA_9 | 34238 | 34041 | CspR | 6.24e-29 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| DHDAFLJA_9 | 34238 | 34044 | CspA | 3.04e-28 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DHDAFLJA_3 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_4 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_5 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_6 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_7 | 1.0 | 0.0 | 1.0 |
| DHDAFLJA_8 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_9 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_10 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_11 | 1.0 | 0.0 | 1.0 |
| DHDAFLJA_12 | 1.0 | 0.0 | 1.0 |
| DHDAFLJA_13 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_14 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_15 | 1.0 | 0.0 | 1.0 |
| DHDAFLJA_16 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_17 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_18 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_19 | 1.0 | 0.0 | 1.0 |
| DHDAFLJA_20 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_21 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_22 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_23 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_24 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_25 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_26 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_27 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_28 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_29 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_30 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_31 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_32 | 1.0 | 0.0 | 1.0 |
| DHDAFLJA_33 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_34 | 1.0 | 0.0 | 1.0 |
| DHDAFLJA_35 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_36 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_37 | 1.0 | 0.0 | 1.0 |
| DHDAFLJA_38 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_39 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_40 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_41 | 1.0 | 0.0 | 1.0 |
| DHDAFLJA_42 | 1.0 | 0.0 | 1.0 |
| DHDAFLJA_43 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_44 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_45 | 1.0 | 0.0 | 1.0 |
| DHDAFLJA_46 | 1.0 | 0.0 | 1.0 |
| DHDAFLJA_47 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_48 | 1.0 | 0.0 | 1.0 |
| DHDAFLJA_49 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_50 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_51 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_52 | 1.0 | 0.0 | 1.0 |
| DHDAFLJA_53 | 1.0 | 0.0 | 1.0 |
| DHDAFLJA_54 | 1.0 | 0.0 | 1.0 |
| DHDAFLJA_55 | 1.0 | 0.0 | 1.0 |
| DHDAFLJA_56 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_57 | 1.0 | 0.0 | 1.0 |
| DHDAFLJA_58 | 1.0 | 0.0 | 1.0 |
| DHDAFLJA_59 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_60 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_61 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_62 | 1.0 | 0.0 | 1.0 |
| DHDAFLJA_63 | 1.0 | 0.0 | 1.0 |
| DHDAFLJA_64 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_65 | 1.0 | 0.0 | 1.0 |
| DHDAFLJA_66 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_67 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_68 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_70 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_71 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_72 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_73 | 1.0 | 0.0 | 1.0 |
| DHDAFLJA_74 | 1.0 | 0.0 | 1.0 |
| DHDAFLJA_75 | 1.0 | 0.0 | 1.0 |
| DHDAFLJA_76 | 1.0 | 0.0 | 1.0 |
| DHDAFLJA_77 | 1.0 | 0.0 | 1.0 |
| DHDAFLJA_78 | 1.0 | 0.0 | 1.0 |
| DHDAFLJA_79 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_80 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_81 | 1.0 | 0.0 | 1.0 |
| DHDAFLJA_82 | 1.0 | 0.0 | 1.0 |
| DHDAFLJA_83 | 1.0 | 0.0 | 1.0 |
| DHDAFLJA_84 | 1.0 | 0.0 | 1.0 |
| DHDAFLJA_85 | 1.0 | 0.0 | 1.0 |
| DHDAFLJA_86 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_87 | 1.0 | 0.0 | 1.0 |
| DHDAFLJA_88 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_89 | 1.0 | 0.0 | 1.0 |
| DHDAFLJA_90 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_91 | 1.0 | 0.0 | 1.0 |
| DHDAFLJA_92 | 1.0 | 0.0 | 1.0 |
| DHDAFLJA_93 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_94 | 1.0 | 0.0 | 1.0 |
| DHDAFLJA_95 | 1.0 | 0.0 | 1.0 |
| DHDAFLJA_96 | 1.0 | 0.0 | 1.0 |
| DHDAFLJA_97 | 0.0 | 1.0 | 0.0 |
| DHDAFLJA_101 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DHDAFLJA_12 | 24922 | 34760 | False | Siphoviridae | VOG8681, VOG0638, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG9583, VOG0207 |
| DHDAFLJA_19 | 9806 | 21409 | False | Siphoviridae | VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG0637, VOG0198, VOG8681, VOG3699, VOG4544 |
Phigaro v2.4.0 (Database: Jan. 2024 release)