Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 2 | 4.47 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MPDLMCKN_32 | 11634 | 12128 | lnuC | ARO:3002837 | lnuC | 98.17 | 100.00 | AY928180.1 |
| MPDLMCKN_62 | 8401 | 10326 | tet(M) | ARO:3000186 | tet(M) | 99.06 | 100.31 | AB039845.1 |
| MPDLMCKN_93 | 2399 | 3136 | ErmB | ARO:3000375 | ErmB | 99.18 | 98.79 | AF242872.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| MPDLMCKN_93 | 2399 | 3136 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | X72021 |
| MPDLMCKN_109 | 1 | 1280 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.61 | 92.96 | AY081910 |
| MPDLMCKN_62 | 8401 | 10326 | tet(M) | Doxycycline, Tetracycline, Minocycline | 99.58 | 100.00 | X75073 |
| MPDLMCKN_32 | 11634 | 12128 | lnu(C) | Lincomycin | 98.79 | 100.00 | AY928180 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MPDLMCKN_93 | 2399 | 3133 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | EXACTX | 100.00 | 100.00 | WP_001038795.1 |
| MPDLMCKN_62 | 8401 | 10323 | tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 99.69 | 100.00 | WP_000691727.1 |
| MPDLMCKN_109 | 3 | 1280 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 99.06 | 93.01 | WP_002294500.1 |
| MPDLMCKN_32 | 11637 | 12128 | lnu(C) | lincosamide nucleotidyltransferase Lnu(C) | BLASTX | 98.17 | 100.00 | WP_063851341.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MPDLMCKN_111 | 32383 | 33090 | WalR | 1.80e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| MPDLMCKN_19 | 7676 | 7873 | CspR | 6.24e-29 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| MPDLMCKN_19 | 7676 | 7870 | CspA | 3.04e-28 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MPDLMCKN_11 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_14 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_15 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_16 | 1.0 | 0.0 | 1.0 |
| MPDLMCKN_17 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_18 | 1.0 | 0.0 | 1.0 |
| MPDLMCKN_19 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_20 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_21 | 1.0 | 0.0 | 1.0 |
| MPDLMCKN_22 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_23 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_24 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_25 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_26 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_27 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_28 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_29 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_30 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_31 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_32 | 1.0 | 0.0 | 1.0 |
| MPDLMCKN_33 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_34 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_35 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_36 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_37 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_38 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_39 | 1.0 | 0.0 | 1.0 |
| MPDLMCKN_40 | 1.0 | 0.0 | 1.0 |
| MPDLMCKN_41 | 1.0 | 0.0 | 1.0 |
| MPDLMCKN_42 | 1.0 | 0.0 | 1.0 |
| MPDLMCKN_43 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_44 | 1.0 | 0.0 | 1.0 |
| MPDLMCKN_45 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_46 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_47 | 1.0 | 0.0 | 1.0 |
| MPDLMCKN_48 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_49 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_50 | 1.0 | 0.0 | 1.0 |
| MPDLMCKN_51 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_52 | 1.0 | 0.0 | 1.0 |
| MPDLMCKN_53 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_54 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_55 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_56 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_57 | 1.0 | 0.0 | 1.0 |
| MPDLMCKN_58 | 1.0 | 0.0 | 1.0 |
| MPDLMCKN_59 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_60 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_61 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_62 | 1.0 | 0.0 | 1.0 |
| MPDLMCKN_63 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_64 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_65 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_66 | 1.0 | 0.0 | 1.0 |
| MPDLMCKN_67 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_68 | 1.0 | 0.0 | 1.0 |
| MPDLMCKN_69 | 1.0 | 0.0 | 1.0 |
| MPDLMCKN_70 | 1.0 | 0.0 | 1.0 |
| MPDLMCKN_71 | 1.0 | 0.0 | 1.0 |
| MPDLMCKN_72 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_73 | 1.0 | 0.0 | 1.0 |
| MPDLMCKN_74 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_75 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_76 | 1.0 | 0.0 | 1.0 |
| MPDLMCKN_77 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_78 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_79 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_80 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_81 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_82 | 1.0 | 0.0 | 1.0 |
| MPDLMCKN_83 | 1.0 | 0.0 | 1.0 |
| MPDLMCKN_84 | 1.0 | 0.0 | 1.0 |
| MPDLMCKN_85 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_86 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_87 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_89 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_90 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_91 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_92 | 1.0 | 0.0 | 1.0 |
| MPDLMCKN_93 | 1.0 | 0.0 | 1.0 |
| MPDLMCKN_94 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_95 | 1.0 | 0.0 | 1.0 |
| MPDLMCKN_96 | 1.0 | 0.0 | 1.0 |
| MPDLMCKN_97 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_98 | 1.0 | 0.0 | 1.0 |
| MPDLMCKN_99 | 1.0 | 0.0 | 1.0 |
| MPDLMCKN_100 | 1.0 | 0.0 | 1.0 |
| MPDLMCKN_101 | 1.0 | 0.0 | 1.0 |
| MPDLMCKN_102 | 1.0 | 0.0 | 1.0 |
| MPDLMCKN_103 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_104 | 1.0 | 0.0 | 1.0 |
| MPDLMCKN_105 | 1.0 | 0.0 | 1.0 |
| MPDLMCKN_106 | 1.0 | 0.0 | 1.0 |
| MPDLMCKN_107 | 1.0 | 0.0 | 1.0 |
| MPDLMCKN_108 | 0.0 | 1.0 | 0.0 |
| MPDLMCKN_109 | 1.0 | 0.0 | 1.0 |
| MPDLMCKN_110 | 1.0 | 0.0 | 1.0 |
| MPDLMCKN_111 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)