Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 2 | 5.39 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AHLAJLNN_79 | 27090 | 27584 | lnuC | ARO:3002837 | lnuC | 98.17 | 100.00 | AY928180.1 |
| AHLAJLNN_137 | 4363 | 5739 | tet(L) | ARO:3000179 | tet(L) | 98.69 | 100.00 | M11036.1 |
| AHLAJLNN_146 | 940 | 1677 | ErmB | ARO:3000375 | ErmB | 99.18 | 98.79 | AF242872.1 |
| AHLAJLNN_88 | 843 | 2768 | tet(M) | ARO:3000186 | tet(M) | 99.06 | 100.31 | AB039845.1 |
| AHLAJLNN_137 | 111 | 845 | ErmA | ARO:3000347 | ErmA | 85.19 | 100.41 | X03216.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| AHLAJLNN_146 | 940 | 1677 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | X72021 |
| AHLAJLNN_137 | 4363 | 5739 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 99.71 | 100.00 | AY081910 |
| AHLAJLNN_137 | 111 | 836 | erm(A) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.59 | 99.18 | EU348758 |
| AHLAJLNN_88 | 843 | 2768 | tet(M) | Doxycycline, Tetracycline, Minocycline | 99.58 | 100.00 | X75073 |
| AHLAJLNN_79 | 27090 | 27584 | lnu(C) | Lincomycin | 98.79 | 100.00 | AY928180 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AHLAJLNN_146 | 943 | 1677 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | EXACTX | 100.00 | 100.00 | WP_001038795.1 |
| AHLAJLNN_88 | 846 | 2768 | tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 99.69 | 100.00 | WP_000691727.1 |
| AHLAJLNN_137 | 4366 | 5739 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 99.13 | 100.00 | WP_002294500.1 |
| AHLAJLNN_79 | 27093 | 27584 | lnu(C) | lincosamide nucleotidyltransferase Lnu(C) | BLASTX | 98.17 | 100.00 | WP_063851341.1 |
| AHLAJLNN_137 | 111 | 839 | erm(A) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A) | BLASTX | 85.19 | 100.00 | WP_001072197.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| AHLAJLNN_167 | 20619 | 19912 | WalR | 1.80e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| AHLAJLNN_75 | 7674 | 7871 | CspR | 6.24e-29 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| AHLAJLNN_75 | 7674 | 7868 | CspA | 3.04e-28 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| AHLAJLNN_1 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_2 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_3 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_4 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_5 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_6 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_8 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_9 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_10 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_11 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_12 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_13 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_14 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_15 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_16 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_17 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_18 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_20 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_21 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_22 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_23 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_24 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_25 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_26 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_27 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_28 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_29 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_30 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_31 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_32 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_33 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_34 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_35 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_36 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_38 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_39 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_41 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_42 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_43 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_44 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_45 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_46 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_55 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_66 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_75 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_76 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_77 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_78 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_79 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_80 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_81 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_82 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_83 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_84 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_85 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_86 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_87 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_88 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_89 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_90 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_91 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_92 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_93 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_94 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_95 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_96 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_97 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_98 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_99 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_100 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_101 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_102 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_103 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_104 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_105 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_106 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_107 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_108 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_109 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_110 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_111 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_112 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_113 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_114 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_115 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_116 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_117 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_118 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_119 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_120 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_121 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_122 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_123 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_124 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_125 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_126 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_127 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_128 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_129 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_130 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_131 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_132 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_133 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_134 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_135 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_136 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_137 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_138 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_139 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_141 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_142 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_143 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_144 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_145 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_146 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_147 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_148 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_150 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_151 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_152 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_153 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_154 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_155 | 0.0 | 1.0 | 0.0 |
| AHLAJLNN_156 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_157 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_159 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_160 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_162 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_163 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_164 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_166 | 1.0 | 0.0 | 1.0 |
| AHLAJLNN_167 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| AHLAJLNN_78 | 24920 | 34758 | False | Siphoviridae | VOG8681, VOG0638, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG9583, VOG0207 |
| AHLAJLNN_81 | 3271 | 26496 | False | Siphoviridae | VOG0801, VOG5793, VOG0701, VOG9763, VOG0698, VOG0697, VOG0696, VOG0695, VOG4555, VOG10527, VOG0692, VOG0691, VOG4544, VOG3699, VOG8681, VOG0198, VOG0637, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0321 |
Phigaro v2.4.0 (Database: Jan. 2024 release)