Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 2 | 6.32 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GBDJIDKD_69 | 87418 | 87912 | lnuC | ARO:3002837 | lnuC | 98.17 | 100.00 | AY928180.1 |
| GBDJIDKD_37 | 6675 | 7388 | ErmA | ARO:3000347 | ErmA | 99.58 | 97.53 | X03216.1 |
| GBDJIDKD_37 | 5671 | 6453 | ANT(9)-Ia | ARO:3002630 | ANT(9)-Ia | 100.00 | 100.00 | X02588.1 |
| GBDJIDKD_66 | 3470 | 5395 | tet(M) | ARO:3000186 | tet(M) | 98.75 | 100.31 | AB039845.1 |
| GBDJIDKD_117 | 402 | 887 | lnuA | ARO:3002835 | lnuA | 96.89 | 100.00 | M14039.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GBDJIDKD_37 | 5671 | 6453 | ant(9)-Ia | Spectinomycin | 99.87 | 100.00 | X02588 |
| GBDJIDKD_37 | 6678 | 7388 | erm(A) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.86 | 97.13 | X03216 |
| GBDJIDKD_66 | 1900 | 3275 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.49 | 99.93 | AY081910 |
| GBDJIDKD_66 | 3470 | 5395 | tet(M) | Doxycycline, Tetracycline, Minocycline | 99.48 | 100.00 | X75073 |
| GBDJIDKD_69 | 87418 | 87912 | lnu(C) | Lincomycin | 98.99 | 100.00 | AY928180 |
| GBDJIDKD_117 | 402 | 887 | lnu(A) | Lincomycin | 98.35 | 100.00 | M14039 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GBDJIDKD_37 | 5671 | 6450 | ant(9)-Ia | aminoglycoside nucleotidyltransferase ANT(9)-Ia | EXACTX | 100.00 | 100.00 | WP_000067268.1 |
| GBDJIDKD_37 | 6678 | 7388 | erm(A) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A) | BLASTX | 99.58 | 97.53 | WP_001072201.1 |
| GBDJIDKD_117 | 402 | 884 | lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | BLASTX | 99.38 | 100.00 | WP_001829870.1 |
| GBDJIDKD_66 | 3473 | 5395 | tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 99.38 | 100.00 | WP_000691727.1 |
| GBDJIDKD_66 | 1903 | 3276 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 98.69 | 100.00 | WP_002294500.1 |
| GBDJIDKD_69 | 87421 | 87912 | lnu(C) | lincosamide nucleotidyltransferase Lnu(C) | BLASTX | 98.17 | 100.00 | WP_063851341.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GBDJIDKD_31 | 20618 | 19911 | WalR | 1.45e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| GBDJIDKD_29 | 30568 | 30371 | CspR | 7.63e-29 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| GBDJIDKD_29 | 30568 | 30374 | CspA | 3.72e-28 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GBDJIDKD_1 | 1.0 | 0.0 | 1.0 |
| GBDJIDKD_2 | 1.0 | 0.0 | 1.0 |
| GBDJIDKD_3 | 1.0 | 0.0 | 1.0 |
| GBDJIDKD_4 | 1.0 | 0.0 | 1.0 |
| GBDJIDKD_5 | 1.0 | 0.0 | 1.0 |
| GBDJIDKD_6 | 1.0 | 0.0 | 1.0 |
| GBDJIDKD_7 | 1.0 | 0.0 | 1.0 |
| GBDJIDKD_8 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_9 | 1.0 | 0.0 | 1.0 |
| GBDJIDKD_10 | 1.0 | 0.0 | 1.0 |
| GBDJIDKD_11 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_12 | 1.0 | 0.0 | 1.0 |
| GBDJIDKD_13 | 1.0 | 0.0 | 1.0 |
| GBDJIDKD_22 | 1.0 | 0.0 | 1.0 |
| GBDJIDKD_28 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_29 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_30 | 1.0 | 0.0 | 1.0 |
| GBDJIDKD_31 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_32 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_33 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_34 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_35 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_36 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_37 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_38 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_39 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_40 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_41 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_42 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_43 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_44 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_45 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_46 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_47 | 1.0 | 0.0 | 1.0 |
| GBDJIDKD_48 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_49 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_50 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_51 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_52 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_53 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_54 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_55 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_56 | 1.0 | 0.0 | 1.0 |
| GBDJIDKD_57 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_58 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_59 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_60 | 1.0 | 0.0 | 1.0 |
| GBDJIDKD_61 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_62 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_63 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_64 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_65 | 1.0 | 0.0 | 1.0 |
| GBDJIDKD_66 | 1.0 | 0.0 | 1.0 |
| GBDJIDKD_67 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_68 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_69 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_70 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_71 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_72 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_73 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_74 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_75 | 1.0 | 0.0 | 1.0 |
| GBDJIDKD_76 | 1.0 | 0.0 | 1.0 |
| GBDJIDKD_77 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_78 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_79 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_80 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_81 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_82 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_83 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_84 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_85 | 1.0 | 0.0 | 1.0 |
| GBDJIDKD_86 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_87 | 1.0 | 0.0 | 1.0 |
| GBDJIDKD_88 | 1.0 | 0.0 | 1.0 |
| GBDJIDKD_89 | 1.0 | 0.0 | 1.0 |
| GBDJIDKD_90 | 1.0 | 0.0 | 1.0 |
| GBDJIDKD_91 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_92 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_93 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_94 | 1.0 | 0.0 | 1.0 |
| GBDJIDKD_95 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_96 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_97 | 1.0 | 0.0 | 1.0 |
| GBDJIDKD_98 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_99 | 1.0 | 0.0 | 1.0 |
| GBDJIDKD_101 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_102 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_103 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_104 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_105 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_106 | 1.0 | 0.0 | 1.0 |
| GBDJIDKD_107 | 1.0 | 0.0 | 1.0 |
| GBDJIDKD_108 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_109 | 1.0 | 0.0 | 1.0 |
| GBDJIDKD_110 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_111 | 1.0 | 0.0 | 1.0 |
| GBDJIDKD_112 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_113 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_114 | 1.0 | 0.0 | 1.0 |
| GBDJIDKD_115 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_116 | 1.0 | 0.0 | 1.0 |
| GBDJIDKD_117 | 1.0 | 0.0 | 1.0 |
| GBDJIDKD_118 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_119 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_120 | 1.0 | 0.0 | 1.0 |
| GBDJIDKD_121 | 1.0 | 0.0 | 1.0 |
| GBDJIDKD_122 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_123 | 0.0 | 1.0 | 0.0 |
| GBDJIDKD_124 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GBDJIDKD_30 | 24271 | 47023 | False | Siphoviridae | VOG0198, VOG8681, VOG0638, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG9583, VOG0207, VOG4586, VOG4545, VOG0801, VOG3462, VOG7521, VOG4856, VOG5916, VOG5465, VOG4334 |
| GBDJIDKD_42 | 4319 | 17824 | False | Siphoviridae | VOG0704, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG4544, VOG1517, VOG4070, VOG1326, VOG0198, VOG4375, VOG3267, VOG10696, VOG5545, VOG1298 |
| GBDJIDKD_42 | 19616 | 21813 | False | Siphoviridae | VOG0189, VOG4566, VOG4799, VOG11003 |
| GBDJIDKD_47 | 89802 | 91641 | False | Unknown | VOG8810, VOG0267, VOG0267, VOG0267, VOG0267, VOG8288 |
| GBDJIDKD_58 | 64716 | 71004 | False | Myoviridae | VOG7006, VOG5854, VOG8353, VOG4921, VOG0831, VOG4552, VOG9667, VOG8520, VOG8520 |
Phigaro v2.4.0 (Database: Jan. 2024 release)