Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 8 | 0 | 2 | 8.25 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DFBNAGCM_233 | 5670 | 6452 | ANT(9)-Ia | ARO:3002630 | ANT(9)-Ia | 100.00 | 100.00 | X02588.1 |
| DFBNAGCM_182 | 4405 | 5814 | fexB | ARO:3007019 | fexB | 99.57 | 100.00 | JN201336.1 |
| DFBNAGCM_234 | 3873 | 5792 | tet(M) | ARO:3000186 | tet(M) | 98.75 | 100.00 | AB039845.1 |
| DFBNAGCM_14 | 3454 | 4158 | ErmA | ARO:3000347 | ErmA | 85.11 | 96.71 | X03216.1 |
| DFBNAGCM_234 | 2303 | 3679 | tet(L) | ARO:3000179 | tet(L) | 98.69 | 100.00 | M11036.1 |
| DFBNAGCM_29 | 2246 | 2740 | lnuC | ARO:3002837 | lnuC | 98.17 | 100.00 | AY928180.1 |
| DFBNAGCM_95 | 141 | 908 | ANT(6)-Ia | ARO:3002626 | ANT(6)-Ia | 100.00 | 88.85 | KF648874.1 |
| DFBNAGCM_143 | 1 | 711 | ErmA | ARO:3000347 | ErmA | 99.58 | 97.53 | X03216.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DFBNAGCM_14 | 3454 | 4159 | erm(A) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 96.45 | EU348758 |
| DFBNAGCM_95 | 141 | 909 | ant(6)-Ia | Streptomycin | 100.00 | 89.00 | KF421157 |
| DFBNAGCM_233 | 5670 | 6452 | ant(9)-Ia | Spectinomycin | 99.87 | 100.00 | X02588 |
| DFBNAGCM_182 | 4405 | 5814 | fexB | Chloramphenicol, Florfenicol | 99.86 | 100.00 | JN201336 |
| DFBNAGCM_234 | 2303 | 3679 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 99.71 | 100.00 | AY081910 |
| DFBNAGCM_234 | 3873 | 5792 | tet(M) | Doxycycline, Tetracycline, Minocycline | 99.06 | 100.00 | AM990992 |
| DFBNAGCM_29 | 2246 | 2740 | lnu(C) | Lincomycin | 98.79 | 100.00 | AY928180 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DFBNAGCM_233 | 5670 | 6449 | ant(9)-Ia | aminoglycoside nucleotidyltransferase ANT(9)-Ia | EXACTX | 100.00 | 100.00 | WP_000067268.1 |
| DFBNAGCM_95 | 144 | 908 | ant(6)-Ia | aminoglycoside nucleotidyltransferase ANT(6)-Ia | PARTIAL_CONTIG_ENDX | 100.00 | 88.85 | WP_002294505.1 |
| DFBNAGCM_143 | 1 | 711 | erm(A) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A) | BLASTX | 99.58 | 97.53 | WP_001072201.1 |
| DFBNAGCM_182 | 4405 | 5811 | fexB | chloramphenicol/florfenicol efflux MFS transporter FexB | BLASTX | 99.57 | 100.00 | WP_002415211.1 |
| DFBNAGCM_234 | 3876 | 5792 | tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 99.37 | 100.00 | WP_000691727.1 |
| DFBNAGCM_234 | 2306 | 3679 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 99.13 | 100.00 | WP_002294500.1 |
| DFBNAGCM_29 | 2246 | 2737 | lnu(C) | lincosamide nucleotidyltransferase Lnu(C) | BLASTX | 98.17 | 100.00 | WP_063851341.1 |
| DFBNAGCM_14 | 3454 | 4158 | erm(A) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A) | BLASTX | 85.11 | 96.71 | WP_001072197.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DFBNAGCM_191 | 24578 | 25285 | WalR | 2.46e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| DFBNAGCM_181 | 3502 | 3699 | CspR | 2.61e-29 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| DFBNAGCM_181 | 3502 | 3696 | CspA | 1.27e-28 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DFBNAGCM_1 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_2 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_3 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_4 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_5 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_6 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_7 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_8 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_9 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_10 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_11 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_12 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_13 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_14 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_15 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_16 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_17 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_18 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_19 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_20 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_21 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_22 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_23 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_24 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_25 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_26 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_27 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_28 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_29 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_30 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_31 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_32 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_33 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_34 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_35 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_36 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_37 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_38 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_39 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_40 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_41 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_42 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_43 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_44 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_45 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_46 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_47 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_48 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_49 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_50 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_51 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_52 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_54 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_55 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_56 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_57 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_58 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_59 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_60 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_61 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_62 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_63 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_64 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_65 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_66 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_67 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_68 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_69 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_70 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_71 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_73 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_74 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_75 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_76 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_77 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_78 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_79 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_80 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_81 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_82 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_83 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_84 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_86 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_87 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_88 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_99 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_110 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_111 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_122 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_133 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_143 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_154 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_163 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_164 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_165 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_166 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_167 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_168 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_169 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_170 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_171 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_172 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_173 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_174 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_175 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_176 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_177 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_178 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_179 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_180 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_181 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_182 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_183 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_184 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_185 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_186 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_187 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_188 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_189 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_190 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_191 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_192 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_193 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_194 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_195 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_196 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_197 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_198 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_199 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_200 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_201 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_202 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_203 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_204 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_205 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_206 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_207 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_208 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_209 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_210 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_211 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_212 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_213 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_214 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_215 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_216 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_217 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_218 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_219 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_220 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_221 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_222 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_223 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_224 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_225 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_226 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_227 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_228 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_229 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_230 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_231 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_232 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_233 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_234 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_235 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_236 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_237 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_238 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_239 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_240 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_241 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_242 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_243 | 0.0 | 1.0 | 0.0 |
| DFBNAGCM_245 | 1.0 | 0.0 | 1.0 |
| DFBNAGCM_246 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)