Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 2 | 5.39 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MBDPKOFG_32 | 12595 | 13971 | tet(L) | ARO:3000179 | tet(L) | 98.69 | 100.00 | M11036.1 |
| MBDPKOFG_32 | 10482 | 12401 | tet(M) | ARO:3000186 | tet(M) | 98.75 | 100.00 | AB039845.1 |
| MBDPKOFG_39 | 7264 | 8127 | ANT(6)-Ia | ARO:3002626 | ANT(6)-Ia | 100.00 | 100.00 | KF648874.1 |
| MBDPKOFG_70 | 2548 | 3282 | ErmA | ARO:3000347 | ErmA | 85.19 | 100.41 | X03216.1 |
| MBDPKOFG_75 | 1152 | 1646 | lnuC | ARO:3002837 | lnuC | 98.17 | 100.00 | AY928180.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| MBDPKOFG_39 | 7264 | 8127 | ant(6)-Ia | Streptomycin | 100.00 | 100.00 | KF421157 |
| MBDPKOFG_32 | 12595 | 13971 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.71 | 100.00 | AY081910 |
| MBDPKOFG_70 | 2548 | 3273 | erm(A) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.59 | 99.18 | EU348758 |
| MBDPKOFG_32 | 10482 | 12401 | tet(M) | Doxycycline, Tetracycline, Minocycline | 99.06 | 100.00 | AM990992 |
| MBDPKOFG_75 | 1152 | 1646 | lnu(C) | Lincomycin | 98.79 | 100.00 | AY928180 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MBDPKOFG_39 | 7267 | 8127 | ant(6)-Ia | aminoglycoside nucleotidyltransferase ANT(6)-Ia | EXACTX | 100.00 | 100.00 | WP_002294505.1 |
| MBDPKOFG_32 | 10482 | 12398 | tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 99.37 | 100.00 | WP_000691727.1 |
| MBDPKOFG_32 | 12595 | 13968 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 99.13 | 100.00 | WP_002294500.1 |
| MBDPKOFG_75 | 1152 | 1643 | lnu(C) | lincosamide nucleotidyltransferase Lnu(C) | BLASTX | 98.17 | 100.00 | WP_063851341.1 |
| MBDPKOFG_70 | 2548 | 3276 | erm(A) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A) | BLASTX | 85.19 | 100.00 | WP_001072197.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MBDPKOFG_88 | 37559 | 38266 | WalR | 2.05e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| MBDPKOFG_66 | 26890 | 26693 | CspR | 9.81e-29 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| MBDPKOFG_66 | 26890 | 26696 | CspA | 4.79e-28 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MBDPKOFG_1 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_2 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_3 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_4 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_5 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_6 | 1.0 | 0.0 | 1.0 |
| MBDPKOFG_7 | 1.0 | 0.0 | 1.0 |
| MBDPKOFG_8 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_9 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_10 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_11 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_12 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_13 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_14 | 1.0 | 0.0 | 1.0 |
| MBDPKOFG_15 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_16 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_17 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_18 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_19 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_20 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_21 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_22 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_23 | 1.0 | 0.0 | 1.0 |
| MBDPKOFG_24 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_25 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_26 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_27 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_28 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_29 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_30 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_31 | 1.0 | 0.0 | 1.0 |
| MBDPKOFG_32 | 1.0 | 0.0 | 1.0 |
| MBDPKOFG_33 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_34 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_35 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_36 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_37 | 1.0 | 0.0 | 1.0 |
| MBDPKOFG_38 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_39 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_40 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_41 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_42 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_43 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_44 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_45 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_46 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_47 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_48 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_49 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_50 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_51 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_52 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_53 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_54 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_55 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_56 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_57 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_58 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_59 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_60 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_61 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_62 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_63 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_64 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_65 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_66 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_67 | 1.0 | 0.0 | 1.0 |
| MBDPKOFG_68 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_69 | 1.0 | 0.0 | 1.0 |
| MBDPKOFG_70 | 1.0 | 0.0 | 1.0 |
| MBDPKOFG_71 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_72 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_73 | 1.0 | 0.0 | 1.0 |
| MBDPKOFG_74 | 1.0 | 0.0 | 1.0 |
| MBDPKOFG_75 | 1.0 | 0.0 | 1.0 |
| MBDPKOFG_76 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_77 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_78 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_79 | 1.0 | 0.0 | 1.0 |
| MBDPKOFG_80 | 1.0 | 0.0 | 1.0 |
| MBDPKOFG_81 | 1.0 | 0.0 | 1.0 |
| MBDPKOFG_88 | 0.0 | 1.0 | 0.0 |
| MBDPKOFG_91 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MBDPKOFG_11 | 67604 | 81988 | False | Siphoviridae | VOG8294, VOG0703, VOG1637, VOG10223, VOG7629, VOG6036, VOG1026, VOG6941, VOG6246, VOG6524, VOG6031, VOG5721, VOG0377, VOG5722 |
| MBDPKOFG_23 | 3885 | 20424 | False | Siphoviridae | VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG9583, VOG0207, VOG4586, VOG0660, VOG4545, VOG0801 |
| MBDPKOFG_33 | 19741 | 28978 | False | Siphoviridae | VOG5532, VOG6965, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0321, VOG3947, VOG4552 |
Phigaro v2.4.0 (Database: Jan. 2024 release)