Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 2 | 4.47 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MFIDPNOP_12 | 68372 | 68866 | lnuC | ARO:3002837 | lnuC | 98.16 | 100.00 | AY928180.1 |
| MFIDPNOP_38 | 11889 | 13265 | tet(L) | ARO:3000179 | tet(L) | 98.69 | 100.00 | M11036.1 |
| MFIDPNOP_38 | 9776 | 11695 | tet(M) | ARO:3000186 | tet(M) | 98.75 | 100.00 | AB039845.1 |
| MFIDPNOP_63 | 3499 | 4212 | ErmA | ARO:3000347 | ErmA | 84.75 | 97.53 | X03216.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| MFIDPNOP_38 | 11889 | 13265 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.71 | 100.00 | AY081910 |
| MFIDPNOP_63 | 3508 | 4213 | erm(A) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.58 | 96.45 | EU348758 |
| MFIDPNOP_38 | 9776 | 11695 | tet(M) | Doxycycline, Tetracycline, Minocycline | 99.06 | 100.00 | AM990992 |
| MFIDPNOP_12 | 68372 | 68866 | lnu(C) | Lincomycin | 98.99 | 100.00 | AY928180 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MFIDPNOP_38 | 9776 | 11692 | tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 99.37 | 100.00 | WP_000691727.1 |
| MFIDPNOP_38 | 11889 | 13262 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 99.13 | 100.00 | WP_002294500.1 |
| MFIDPNOP_12 | 68378 | 68866 | lnu(C) | lincosamide nucleotidyltransferase Lnu(C) | BLASTX | 98.16 | 99.39 | WP_063851341.1 |
| MFIDPNOP_63 | 3505 | 4212 | erm(A) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A) | BLASTX | 84.75 | 97.12 | WP_001072197.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MFIDPNOP_100 | 33751 | 34458 | WalR | 1.91e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| MFIDPNOP_6 | 20597 | 20794 | CspR | 6.26e-29 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| MFIDPNOP_6 | 20597 | 20791 | CspA | 3.05e-28 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MFIDPNOP_2 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_3 | 1.0 | 0.0 | 1.0 |
| MFIDPNOP_4 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_5 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_6 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_7 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_8 | 1.0 | 0.0 | 1.0 |
| MFIDPNOP_9 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_10 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_11 | 1.0 | 0.0 | 1.0 |
| MFIDPNOP_12 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_13 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_14 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_15 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_16 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_17 | 1.0 | 0.0 | 1.0 |
| MFIDPNOP_18 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_19 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_20 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_21 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_22 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_23 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_24 | 1.0 | 0.0 | 1.0 |
| MFIDPNOP_25 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_26 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_27 | 1.0 | 0.0 | 1.0 |
| MFIDPNOP_28 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_29 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_30 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_31 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_32 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_33 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_34 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_35 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_36 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_37 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_38 | 1.0 | 0.0 | 1.0 |
| MFIDPNOP_39 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_40 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_41 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_42 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_43 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_44 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_45 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_46 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_47 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_48 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_49 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_50 | 1.0 | 0.0 | 1.0 |
| MFIDPNOP_51 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_52 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_53 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_54 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_55 | 1.0 | 0.0 | 1.0 |
| MFIDPNOP_56 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_57 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_58 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_59 | 1.0 | 0.0 | 1.0 |
| MFIDPNOP_60 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_61 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_62 | 1.0 | 0.0 | 1.0 |
| MFIDPNOP_63 | 1.0 | 0.0 | 1.0 |
| MFIDPNOP_64 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_65 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_66 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_67 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_68 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_69 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_70 | 1.0 | 0.0 | 1.0 |
| MFIDPNOP_71 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_72 | 1.0 | 0.0 | 1.0 |
| MFIDPNOP_73 | 1.0 | 0.0 | 1.0 |
| MFIDPNOP_74 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_77 | 1.0 | 0.0 | 1.0 |
| MFIDPNOP_78 | 0.0 | 1.0 | 0.0 |
| MFIDPNOP_79 | 1.0 | 0.0 | 1.0 |
| MFIDPNOP_80 | 1.0 | 0.0 | 1.0 |
| MFIDPNOP_81 | 1.0 | 0.0 | 1.0 |
| MFIDPNOP_89 | 1.0 | 0.0 | 1.0 |
| MFIDPNOP_100 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MFIDPNOP_34 | 31834 | 60818 | False | Siphoviridae | VOG6495, VOG9667, VOG4552, VOG4995, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG0198, VOG8681, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG9583, VOG0207, VOG4586, VOG9312, VOG0866, VOG5793, VOG0801, VOG3462, VOG4190 |
Phigaro v2.4.0 (Database: Jan. 2024 release)