Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 2 | 4.47 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HJCPCPEK_39 | 11890 | 13266 | tet(L) | ARO:3000179 | tet(L) | 98.69 | 100.00 | M11036.1 |
| HJCPCPEK_39 | 9777 | 11696 | tet(M) | ARO:3000186 | tet(M) | 98.75 | 100.00 | AB039845.1 |
| HJCPCPEK_70 | 2527 | 3261 | ErmA | ARO:3000347 | ErmA | 85.19 | 100.41 | X03216.1 |
| HJCPCPEK_80 | 1235 | 1729 | lnuC | ARO:3002837 | lnuC | 98.17 | 100.00 | AY928180.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HJCPCPEK_39 | 11890 | 13266 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 99.71 | 100.00 | AY081910 |
| HJCPCPEK_70 | 2536 | 3261 | erm(A) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.59 | 99.18 | EU348758 |
| HJCPCPEK_80 | 1235 | 1729 | lnu(C) | Lincomycin | 99.19 | 100.00 | AY928180 |
| HJCPCPEK_39 | 9777 | 11696 | tet(M) | Doxycycline, Tetracycline, Minocycline | 99.06 | 100.00 | AM990992 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HJCPCPEK_39 | 9777 | 11693 | tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 99.37 | 100.00 | WP_000691727.1 |
| HJCPCPEK_39 | 11890 | 13263 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 99.13 | 100.00 | WP_002294500.1 |
| HJCPCPEK_80 | 1235 | 1726 | lnu(C) | lincosamide nucleotidyltransferase Lnu(C) | BLASTX | 98.17 | 100.00 | WP_063851341.1 |
| HJCPCPEK_70 | 2533 | 3261 | erm(A) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A) | BLASTX | 85.19 | 100.00 | WP_001072197.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HJCPCPEK_96 | 23024 | 22317 | WalR | 1.93e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| HJCPCPEK_3 | 20598 | 20795 | CspR | 6.26e-29 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| HJCPCPEK_3 | 20598 | 20792 | CspA | 3.05e-28 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HJCPCPEK_1 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_2 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_3 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_4 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_5 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_6 | 1.0 | 0.0 | 1.0 |
| HJCPCPEK_7 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_8 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_9 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_10 | 1.0 | 0.0 | 1.0 |
| HJCPCPEK_11 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_12 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_13 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_14 | 1.0 | 0.0 | 1.0 |
| HJCPCPEK_15 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_16 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_17 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_18 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_19 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_20 | 1.0 | 0.0 | 1.0 |
| HJCPCPEK_21 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_22 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_23 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_24 | 1.0 | 0.0 | 1.0 |
| HJCPCPEK_25 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_26 | 1.0 | 0.0 | 1.0 |
| HJCPCPEK_27 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_28 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_29 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_30 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_31 | 1.0 | 0.0 | 1.0 |
| HJCPCPEK_32 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_33 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_34 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_35 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_36 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_37 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_38 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_39 | 1.0 | 0.0 | 1.0 |
| HJCPCPEK_40 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_41 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_42 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_43 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_44 | 1.0 | 0.0 | 1.0 |
| HJCPCPEK_45 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_46 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_47 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_48 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_49 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_50 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_51 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_52 | 1.0 | 0.0 | 1.0 |
| HJCPCPEK_53 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_54 | 1.0 | 0.0 | 1.0 |
| HJCPCPEK_55 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_56 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_57 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_58 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_59 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_60 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_61 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_62 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_63 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_64 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_65 | 1.0 | 0.0 | 1.0 |
| HJCPCPEK_66 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_67 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_68 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_69 | 1.0 | 0.0 | 1.0 |
| HJCPCPEK_70 | 1.0 | 0.0 | 1.0 |
| HJCPCPEK_71 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_72 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_73 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_74 | 1.0 | 0.0 | 1.0 |
| HJCPCPEK_76 | 1.0 | 0.0 | 1.0 |
| HJCPCPEK_77 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_78 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_79 | 1.0 | 0.0 | 1.0 |
| HJCPCPEK_80 | 1.0 | 0.0 | 1.0 |
| HJCPCPEK_81 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_82 | 1.0 | 0.0 | 1.0 |
| HJCPCPEK_83 | 1.0 | 0.0 | 1.0 |
| HJCPCPEK_85 | 1.0 | 0.0 | 1.0 |
| HJCPCPEK_86 | 1.0 | 0.0 | 1.0 |
| HJCPCPEK_88 | 0.0 | 1.0 | 0.0 |
| HJCPCPEK_96 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HJCPCPEK_55 | 6405 | 34980 | False | Siphoviridae | VOG4190, VOG3462, VOG0801, VOG5793, VOG0866, VOG9312, VOG4586, VOG0207, VOG9583, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG8681, VOG0198, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0321, VOG4995, VOG4552, VOG9667 |
Phigaro v2.4.0 (Database: Jan. 2024 release)