Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 2 | 6.32 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HIAAEOGC_6 | 37906 | 39282 | tet(L) | ARO:3000179 | tet(L) | 98.69 | 100.00 | M11036.1 |
| HIAAEOGC_6 | 35793 | 37712 | tet(M) | ARO:3000186 | tet(M) | 98.75 | 100.00 | AB039845.1 |
| HIAAEOGC_13 | 34786 | 35280 | lnuC | ARO:3002837 | lnuC | 98.17 | 100.00 | AY928180.1 |
| HIAAEOGC_38 | 6452 | 7315 | ANT(6)-Ia | ARO:3002626 | ANT(6)-Ia | 100.00 | 100.00 | KF648874.1 |
| HIAAEOGC_61 | 4319 | 5179 | TEM-171 | ARO:3001037 | TEM-171 | 100.00 | 100.00 | GQ149347.1 |
| HIAAEOGC_69 | 951 | 1685 | ErmA | ARO:3000347 | ErmA | 85.19 | 100.41 | X03216.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HIAAEOGC_38 | 6452 | 7315 | ant(6)-Ia | Streptomycin | 100.00 | 100.00 | KF421157 |
| HIAAEOGC_61 | 4319 | 5179 | blaTEM-171 | Unknown Beta-lactam | 100.00 | 100.00 | GQ149347 |
| HIAAEOGC_6 | 37906 | 39282 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.71 | 100.00 | AY081910 |
| HIAAEOGC_69 | 951 | 1676 | erm(A) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.59 | 99.18 | EU348758 |
| HIAAEOGC_6 | 35793 | 37712 | tet(M) | Doxycycline, Tetracycline, Minocycline | 99.06 | 100.00 | AM990992 |
| HIAAEOGC_13 | 34786 | 35280 | lnu(C) | Lincomycin | 98.79 | 100.00 | AY928180 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HIAAEOGC_38 | 6452 | 7312 | ant(6)-Ia | aminoglycoside nucleotidyltransferase ANT(6)-Ia | EXACTX | 100.00 | 100.00 | WP_002294505.1 |
| HIAAEOGC_61 | 4322 | 5179 | blaTEM-171 | class A beta-lactamase TEM-171 | ALLELEX | 100.00 | 100.00 | WP_015058867.1 |
| HIAAEOGC_6 | 35793 | 37709 | tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 99.37 | 100.00 | WP_000691727.1 |
| HIAAEOGC_6 | 37906 | 39279 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 99.13 | 100.00 | WP_002294500.1 |
| HIAAEOGC_13 | 34786 | 35277 | lnu(C) | lincosamide nucleotidyltransferase Lnu(C) | BLASTX | 98.17 | 100.00 | WP_063851341.1 |
| HIAAEOGC_69 | 951 | 1679 | erm(A) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A) | BLASTX | 85.19 | 100.00 | WP_001072197.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HIAAEOGC_1 | 37559 | 38266 | WalR | 1.98e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| HIAAEOGC_66 | 38399 | 38596 | CspR | 9.72e-29 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| HIAAEOGC_66 | 38399 | 38593 | CspA | 4.74e-28 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HIAAEOGC_61 | 3774 | 3904 | ColRNAI | 131 / 130 | 87.02 | DQ298019 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HIAAEOGC_1 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_2 | 1.0 | 0.0 | 1.0 |
| HIAAEOGC_3 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_4 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_5 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_6 | 1.0 | 0.0 | 1.0 |
| HIAAEOGC_7 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_8 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_9 | 1.0 | 0.0 | 1.0 |
| HIAAEOGC_10 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_11 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_12 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_13 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_14 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_15 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_16 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_17 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_18 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_19 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_20 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_21 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_22 | 1.0 | 0.0 | 1.0 |
| HIAAEOGC_23 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_24 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_25 | 1.0 | 0.0 | 1.0 |
| HIAAEOGC_26 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_27 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_28 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_29 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_30 | 1.0 | 0.0 | 1.0 |
| HIAAEOGC_31 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_32 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_33 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_34 | 1.0 | 0.0 | 1.0 |
| HIAAEOGC_35 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_36 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_37 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_38 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_39 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_40 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_41 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_42 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_43 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_44 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_45 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_46 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_47 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_48 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_49 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_50 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_51 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_52 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_53 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_54 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_55 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_56 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_57 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_58 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_59 | 1.0 | 0.0 | 1.0 |
| HIAAEOGC_60 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_61 | 1.0 | 0.0 | 1.0 |
| HIAAEOGC_62 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_63 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_64 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_65 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_66 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_67 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_68 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_69 | 1.0 | 0.0 | 1.0 |
| HIAAEOGC_70 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_71 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_72 | 1.0 | 0.0 | 1.0 |
| HIAAEOGC_73 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_74 | 1.0 | 0.0 | 1.0 |
| HIAAEOGC_75 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_77 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_78 | 1.0 | 0.0 | 1.0 |
| HIAAEOGC_85 | 0.0 | 1.0 | 0.0 |
| HIAAEOGC_86 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HIAAEOGC_11 | 56437 | 88857 | False | Siphoviridae | VOG4552, VOG3947, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG6965, VOG0198, VOG0638, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG9583, VOG0207, VOG4586, VOG0660, VOG4545, VOG0801, VOG3462, VOG4190, VOG8438 |
| HIAAEOGC_22 | 5787 | 11193 | False | Unknown | VOG6031, VOG5721, VOG0377 |
Phigaro v2.4.0 (Database: Jan. 2024 release)