Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 2 | 3.61 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OBAFCEFJ_40 | 9553 | 10047 | lnuC | ARO:3002837 | lnuC | 98.17 | 100.00 | AY928180.1 |
| OBAFCEFJ_79 | 2399 | 3136 | ErmB | ARO:3000375 | ErmB | 99.18 | 98.79 | AF242872.1 |
| OBAFCEFJ_50 | 843 | 2768 | tet(M) | ARO:3000186 | tet(M) | 99.06 | 100.31 | AB039845.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OBAFCEFJ_79 | 2399 | 3136 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | X72021 |
| OBAFCEFJ_50 | 843 | 2768 | tet(M) | Doxycycline, Tetracycline, Minocycline | 99.58 | 100.00 | X75073 |
| OBAFCEFJ_40 | 9553 | 10047 | lnu(C) | Lincomycin | 98.79 | 100.00 | AY928180 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OBAFCEFJ_79 | 2399 | 3133 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | EXACTX | 100.00 | 100.00 | WP_001038795.1 |
| OBAFCEFJ_50 | 846 | 2768 | tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 99.69 | 100.00 | WP_000691727.1 |
| OBAFCEFJ_40 | 9556 | 10047 | lnu(C) | lincosamide nucleotidyltransferase Lnu(C) | BLASTX | 98.17 | 100.00 | WP_063851341.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OBAFCEFJ_2 | 20618 | 19911 | WalR | 1.80e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| OBAFCEFJ_7 | 7679 | 7876 | CspR | 6.24e-29 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| OBAFCEFJ_7 | 7679 | 7873 | CspA | 3.05e-28 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OBAFCEFJ_2 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_3 | 1.0 | 0.0 | 1.0 |
| OBAFCEFJ_4 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_5 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_6 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_7 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_8 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_9 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_10 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_11 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_12 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_13 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_14 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_15 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_16 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_17 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_18 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_19 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_20 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_21 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_22 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_23 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_24 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_25 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_26 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_27 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_28 | 1.0 | 0.0 | 1.0 |
| OBAFCEFJ_29 | 1.0 | 0.0 | 1.0 |
| OBAFCEFJ_30 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_31 | 1.0 | 0.0 | 1.0 |
| OBAFCEFJ_32 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_33 | 1.0 | 0.0 | 1.0 |
| OBAFCEFJ_34 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_35 | 1.0 | 0.0 | 1.0 |
| OBAFCEFJ_36 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_37 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_38 | 1.0 | 0.0 | 1.0 |
| OBAFCEFJ_39 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_40 | 1.0 | 0.0 | 1.0 |
| OBAFCEFJ_41 | 1.0 | 0.0 | 1.0 |
| OBAFCEFJ_42 | 1.0 | 0.0 | 1.0 |
| OBAFCEFJ_43 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_44 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_45 | 1.0 | 0.0 | 1.0 |
| OBAFCEFJ_46 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_47 | 1.0 | 0.0 | 1.0 |
| OBAFCEFJ_48 | 1.0 | 0.0 | 1.0 |
| OBAFCEFJ_49 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_50 | 1.0 | 0.0 | 1.0 |
| OBAFCEFJ_51 | 1.0 | 0.0 | 1.0 |
| OBAFCEFJ_52 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_53 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_54 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_55 | 1.0 | 0.0 | 1.0 |
| OBAFCEFJ_56 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_57 | 1.0 | 0.0 | 1.0 |
| OBAFCEFJ_58 | 1.0 | 0.0 | 1.0 |
| OBAFCEFJ_59 | 1.0 | 0.0 | 1.0 |
| OBAFCEFJ_60 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_61 | 1.0 | 0.0 | 1.0 |
| OBAFCEFJ_62 | 1.0 | 0.0 | 1.0 |
| OBAFCEFJ_63 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_64 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_65 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_66 | 1.0 | 0.0 | 1.0 |
| OBAFCEFJ_67 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_68 | 1.0 | 0.0 | 1.0 |
| OBAFCEFJ_69 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_70 | 1.0 | 0.0 | 1.0 |
| OBAFCEFJ_71 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_72 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_74 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_75 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_76 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_77 | 1.0 | 0.0 | 1.0 |
| OBAFCEFJ_78 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_79 | 1.0 | 0.0 | 1.0 |
| OBAFCEFJ_80 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_81 | 1.0 | 0.0 | 1.0 |
| OBAFCEFJ_82 | 1.0 | 0.0 | 1.0 |
| OBAFCEFJ_83 | 1.0 | 0.0 | 1.0 |
| OBAFCEFJ_84 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_85 | 1.0 | 0.0 | 1.0 |
| OBAFCEFJ_86 | 1.0 | 0.0 | 1.0 |
| OBAFCEFJ_87 | 1.0 | 0.0 | 1.0 |
| OBAFCEFJ_88 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_89 | 1.0 | 0.0 | 1.0 |
| OBAFCEFJ_90 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_91 | 0.0 | 1.0 | 0.0 |
| OBAFCEFJ_92 | 1.0 | 0.0 | 1.0 |
| OBAFCEFJ_93 | 1.0 | 0.0 | 1.0 |
| OBAFCEFJ_94 | 1.0 | 0.0 | 1.0 |
| OBAFCEFJ_95 | 1.0 | 0.0 | 1.0 |
| OBAFCEFJ_100 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OBAFCEFJ_18 | 9806 | 27769 | False | Siphoviridae | VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG0637, VOG7235, VOG0198, VOG8681, VOG0638, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG9583, VOG0207 |
Phigaro v2.4.0 (Database: Jan. 2024 release)