Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 2 | 3.61 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LAPPPGAB_46 | 19984 | 21909 | tet(M) | ARO:3000186 | tet(M) | 99.06 | 100.31 | AB039845.1 |
| LAPPPGAB_87 | 2407 | 3144 | ErmB | ARO:3000375 | ErmB | 99.18 | 98.79 | AF242872.1 |
| LAPPPGAB_98 | 1150 | 1644 | lnuC | ARO:3002837 | lnuC | 98.17 | 100.00 | AY928180.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LAPPPGAB_87 | 2407 | 3144 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | X72021 |
| LAPPPGAB_46 | 19984 | 21909 | tet(M) | Doxycycline, Tetracycline, Minocycline | 99.58 | 100.00 | X75073 |
| LAPPPGAB_98 | 1150 | 1644 | lnu(C) | Lincomycin | 98.79 | 100.00 | AY928180 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LAPPPGAB_87 | 2407 | 3141 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | EXACTX | 100.00 | 100.00 | WP_001038795.1 |
| LAPPPGAB_46 | 19984 | 21906 | tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 99.69 | 100.00 | WP_000691727.1 |
| LAPPPGAB_98 | 1150 | 1641 | lnu(C) | lincosamide nucleotidyltransferase Lnu(C) | BLASTX | 98.17 | 100.00 | WP_063851341.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LAPPPGAB_108 | 21410 | 20703 | WalR | 1.82e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| LAPPPGAB_14 | 7671 | 7868 | CspR | 6.24e-29 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| LAPPPGAB_14 | 7671 | 7865 | CspA | 3.04e-28 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LAPPPGAB_10 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_11 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_12 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_13 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_14 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_15 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_16 | 1.0 | 0.0 | 1.0 |
| LAPPPGAB_17 | 1.0 | 0.0 | 1.0 |
| LAPPPGAB_18 | 1.0 | 0.0 | 1.0 |
| LAPPPGAB_19 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_20 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_21 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_22 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_23 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_24 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_25 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_26 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_27 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_28 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_29 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_30 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_31 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_32 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_33 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_34 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_35 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_36 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_37 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_38 | 1.0 | 0.0 | 1.0 |
| LAPPPGAB_39 | 1.0 | 0.0 | 1.0 |
| LAPPPGAB_40 | 1.0 | 0.0 | 1.0 |
| LAPPPGAB_41 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_42 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_43 | 1.0 | 0.0 | 1.0 |
| LAPPPGAB_44 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_45 | 1.0 | 0.0 | 1.0 |
| LAPPPGAB_46 | 1.0 | 0.0 | 1.0 |
| LAPPPGAB_47 | 1.0 | 0.0 | 1.0 |
| LAPPPGAB_48 | 1.0 | 0.0 | 1.0 |
| LAPPPGAB_49 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_50 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_51 | 1.0 | 0.0 | 1.0 |
| LAPPPGAB_52 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_53 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_54 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_55 | 1.0 | 0.0 | 1.0 |
| LAPPPGAB_56 | 1.0 | 0.0 | 1.0 |
| LAPPPGAB_57 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_58 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_59 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_60 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_61 | 1.0 | 0.0 | 1.0 |
| LAPPPGAB_62 | 1.0 | 0.0 | 1.0 |
| LAPPPGAB_63 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_64 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_65 | 1.0 | 0.0 | 1.0 |
| LAPPPGAB_66 | 1.0 | 0.0 | 1.0 |
| LAPPPGAB_67 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_68 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_69 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_70 | 1.0 | 0.0 | 1.0 |
| LAPPPGAB_71 | 1.0 | 0.0 | 1.0 |
| LAPPPGAB_72 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_73 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_74 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_75 | 1.0 | 0.0 | 1.0 |
| LAPPPGAB_76 | 1.0 | 0.0 | 1.0 |
| LAPPPGAB_77 | 1.0 | 0.0 | 1.0 |
| LAPPPGAB_78 | 1.0 | 0.0 | 1.0 |
| LAPPPGAB_79 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_80 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_81 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_82 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_83 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_84 | 1.0 | 0.0 | 1.0 |
| LAPPPGAB_85 | 1.0 | 0.0 | 1.0 |
| LAPPPGAB_86 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_87 | 1.0 | 0.0 | 1.0 |
| LAPPPGAB_88 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_89 | 1.0 | 0.0 | 1.0 |
| LAPPPGAB_90 | 1.0 | 0.0 | 1.0 |
| LAPPPGAB_91 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_92 | 1.0 | 0.0 | 1.0 |
| LAPPPGAB_93 | 1.0 | 0.0 | 1.0 |
| LAPPPGAB_94 | 1.0 | 0.0 | 1.0 |
| LAPPPGAB_95 | 1.0 | 0.0 | 1.0 |
| LAPPPGAB_96 | 1.0 | 0.0 | 1.0 |
| LAPPPGAB_97 | 1.0 | 0.0 | 1.0 |
| LAPPPGAB_98 | 1.0 | 0.0 | 1.0 |
| LAPPPGAB_99 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_100 | 0.0 | 1.0 | 0.0 |
| LAPPPGAB_101 | 1.0 | 0.0 | 1.0 |
| LAPPPGAB_102 | 1.0 | 0.0 | 1.0 |
| LAPPPGAB_104 | 1.0 | 0.0 | 1.0 |
| LAPPPGAB_105 | 1.0 | 0.0 | 1.0 |
| LAPPPGAB_106 | 1.0 | 0.0 | 1.0 |
| LAPPPGAB_108 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LAPPPGAB_18 | 2761 | 12599 | False | Siphoviridae | VOG4586, VOG0207, VOG9583, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0638, VOG8681 |
| LAPPPGAB_21 | 3273 | 26498 | False | Siphoviridae | VOG0801, VOG5793, VOG0701, VOG9763, VOG0698, VOG0697, VOG0696, VOG0695, VOG4555, VOG10527, VOG0692, VOG0691, VOG4544, VOG3699, VOG8681, VOG0198, VOG0637, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0321 |
Phigaro v2.4.0 (Database: Jan. 2024 release)