Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CCINJADO_1 | 39163 | 39864 | WalR | 3.84e-107 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CCINJADO_5 | 10404 | 11339 | rep28 | 936 / 936 | 99.25 | CP005948 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CCINJADO_1 | 0.0 | 1.0 | 0.0 |
| CCINJADO_2 | 1.0 | 0.0 | 1.0 |
| CCINJADO_3 | 1.0 | 0.0 | 1.0 |
| CCINJADO_4 | 1.0 | 0.0 | 1.0 |
| CCINJADO_5 | 1.0 | 0.0 | 1.0 |
| CCINJADO_6 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CCINJADO_1 | 1016826 | 1068707 | False | Myoviridae | VOG0377, VOG1292, VOG4549, VOG10391, VOG0275, VOG8483, VOG3412, VOG0862, VOG8520, VOG1656, VOG4552, VOG6450, VOG0650, VOG6495, VOG0685, VOG0322, VOG0226, VOG4799, VOG0025, VOG0514, VOG6005, VOG5545, VOG0536, VOG0052, VOG0195, VOG0044, VOG3643, VOG0149, VOG0198, VOG5446, VOG0796, VOG0275, VOG4544, VOG0720, VOG4564, VOG4555, VOG3434, VOG1887, VOG4710, VOG1353, VOG1881, VOG1883, VOG1352, VOG4699, VOG4910, VOG1956, VOG1433, VOG1348, VOG0573, VOG4691, VOG4845, VOG7230, VOG3298, VOG3298 |
| CCINJADO_1 | 1458754 | 1483434 | False | Myoviridae | VOG4845, VOG4691, VOG4550, VOG1348, VOG1433, VOG1956, VOG4910, VOG4699, VOG1352, VOG1883, VOG1881, VOG1353, VOG1887, VOG3434, VOG10914, VOG4564, VOG0720, VOG4544, VOG0796 |
| CCINJADO_1 | 1491701 | 1495662 | False | Unknown | VOG9706, VOG2085, VOG0655, VOG11075, VOG11003, VOG6179 |
| CCINJADO_1 | 1707218 | 1746505 | False | Siphoviridae | VOG0703, VOG4705, VOG9955, VOG10972, VOG4599, VOG4605, VOG5904, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG4581, VOG4214, VOG6725, VOG0198, VOG5088, VOG0044, VOG8425, VOG3480, VOG0052, VOG4566, VOG0514, VOG10904, VOG0226, VOG0283, VOG0321, VOG6888, VOG0650, VOG5088, VOG7724, VOG2124 |
Phigaro v2.4.0 (Database: Jan. 2024 release)