Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| FOONDEMH_1 | 309520 | 310224 | WalR | 4.17e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| FOONDEMH_40 | 254375 | 254569 | CspR | 1.24e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| FOONDEMH_40 | 254375 | 254572 | CspA | 1.90e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| FOONDEMH_16 | 1760 | 2689 | rep28 | 930 / 930 | 97.10 | CP003162 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FOONDEMH_1 | 0.0 | 1.0 | 0.0 |
| FOONDEMH_2 | 0.0 | 1.0 | 0.0 |
| FOONDEMH_3 | 0.0 | 1.0 | 0.0 |
| FOONDEMH_4 | 0.0 | 1.0 | 0.0 |
| FOONDEMH_5 | 0.0 | 1.0 | 0.0 |
| FOONDEMH_7 | 0.0 | 1.0 | 0.0 |
| FOONDEMH_8 | 0.0 | 1.0 | 0.0 |
| FOONDEMH_9 | 0.0 | 1.0 | 0.0 |
| FOONDEMH_11 | 0.0 | 1.0 | 0.0 |
| FOONDEMH_12 | 0.0 | 1.0 | 0.0 |
| FOONDEMH_13 | 0.0 | 1.0 | 0.0 |
| FOONDEMH_14 | 0.0 | 1.0 | 0.0 |
| FOONDEMH_15 | 0.0 | 1.0 | 0.0 |
| FOONDEMH_16 | 1.0 | 0.0 | 1.0 |
| FOONDEMH_17 | 1.0 | 0.0 | 1.0 |
| FOONDEMH_19 | 1.0 | 0.0 | 1.0 |
| FOONDEMH_20 | 0.0 | 1.0 | 0.0 |
| FOONDEMH_22 | 1.0 | 0.0 | 1.0 |
| FOONDEMH_23 | 1.0 | 0.0 | 1.0 |
| FOONDEMH_27 | 1.0 | 0.0 | 1.0 |
| FOONDEMH_29 | 1.0 | 0.0 | 1.0 |
| FOONDEMH_30 | 1.0 | 0.0 | 1.0 |
| FOONDEMH_31 | 1.0 | 0.0 | 1.0 |
| FOONDEMH_32 | 1.0 | 0.0 | 1.0 |
| FOONDEMH_34 | 0.0 | 1.0 | 0.0 |
| FOONDEMH_40 | 0.0 | 1.0 | 0.0 |
| FOONDEMH_41 | 0.0 | 1.0 | 0.0 |
| FOONDEMH_42 | 0.0 | 1.0 | 0.0 |
| FOONDEMH_43 | 0.0 | 1.0 | 0.0 |
| FOONDEMH_44 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FOONDEMH_5 | 150560 | 185225 | False | Siphoviridae | VOG3498, VOG10608, VOG1335, VOG4545, VOG1334, VOG1333, VOG4634, VOG0704, VOG1330, VOG4713, VOG1887, VOG3434, VOG10914, VOG4564, VOG7038, VOG0720, VOG4544, VOG0796, VOG0686, VOG0418, VOG0198, VOG4693, VOG0189, VOG5046, VOG6495, VOG0186, VOG1309, VOG7298, VOG0181, VOG6495, VOG11003 |
| FOONDEMH_5 | 192888 | 204488 | False | Siphoviridae | VOG0198, VOG0204, VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG0205, VOG6414, VOG4609, VOG4632 |
| FOONDEMH_44 | 51333 | 82542 | False | Siphoviridae | VOG0181, VOG5073, VOG0514, VOG4566, VOG0189, VOG0044, VOG3643, VOG1049, VOG0198, VOG7481, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG6163, VOG4605, VOG4599, VOG10957, VOG8870, VOG9998 |
Phigaro v2.4.0 (Database: Jan. 2024 release)