Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GJGNLFEO_67 | 76521 | 75817 | WalR | 1.04e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| GJGNLFEO_56 | 10972 | 11169 | CspR | 2.03e-33 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GJGNLFEO_1 | 0.0 | 1.0 | 0.0 |
| GJGNLFEO_2 | 0.0 | 1.0 | 0.0 |
| GJGNLFEO_3 | 0.0 | 1.0 | 0.0 |
| GJGNLFEO_4 | 0.0 | 1.0 | 0.0 |
| GJGNLFEO_5 | 0.0 | 1.0 | 0.0 |
| GJGNLFEO_6 | 0.0 | 1.0 | 0.0 |
| GJGNLFEO_7 | 0.0 | 1.0 | 0.0 |
| GJGNLFEO_8 | 0.0 | 1.0 | 0.0 |
| GJGNLFEO_9 | 0.0 | 1.0 | 0.0 |
| GJGNLFEO_10 | 0.0 | 1.0 | 0.0 |
| GJGNLFEO_11 | 0.0 | 1.0 | 0.0 |
| GJGNLFEO_12 | 0.0 | 1.0 | 0.0 |
| GJGNLFEO_13 | 0.0 | 1.0 | 0.0 |
| GJGNLFEO_14 | 0.0 | 1.0 | 0.0 |
| GJGNLFEO_15 | 1.0 | 0.0 | 1.0 |
| GJGNLFEO_16 | 0.0 | 1.0 | 0.0 |
| GJGNLFEO_17 | 0.0 | 1.0 | 0.0 |
| GJGNLFEO_18 | 0.0 | 1.0 | 0.0 |
| GJGNLFEO_19 | 0.0 | 1.0 | 0.0 |
| GJGNLFEO_20 | 0.0 | 1.0 | 0.0 |
| GJGNLFEO_21 | 0.0 | 1.0 | 0.0 |
| GJGNLFEO_22 | 0.0 | 1.0 | 0.0 |
| GJGNLFEO_23 | 0.0 | 1.0 | 0.0 |
| GJGNLFEO_24 | 0.0 | 1.0 | 0.0 |
| GJGNLFEO_25 | 0.0 | 1.0 | 0.0 |
| GJGNLFEO_26 | 0.0 | 1.0 | 0.0 |
| GJGNLFEO_27 | 1.0 | 0.0 | 1.0 |
| GJGNLFEO_28 | 0.0 | 1.0 | 0.0 |
| GJGNLFEO_29 | 0.0 | 1.0 | 0.0 |
| GJGNLFEO_30 | 0.0 | 1.0 | 0.0 |
| GJGNLFEO_31 | 0.0 | 1.0 | 0.0 |
| GJGNLFEO_32 | 0.0 | 1.0 | 0.0 |
| GJGNLFEO_33 | 0.0 | 1.0 | 0.0 |
| GJGNLFEO_34 | 0.0 | 1.0 | 0.0 |
| GJGNLFEO_35 | 0.0 | 1.0 | 0.0 |
| GJGNLFEO_36 | 0.0 | 1.0 | 0.0 |
| GJGNLFEO_37 | 1.0 | 0.0 | 1.0 |
| GJGNLFEO_38 | 1.0 | 0.0 | 1.0 |
| GJGNLFEO_39 | 1.0 | 0.0 | 1.0 |
| GJGNLFEO_40 | 1.0 | 0.0 | 1.0 |
| GJGNLFEO_41 | 1.0 | 0.0 | 1.0 |
| GJGNLFEO_42 | 1.0 | 0.0 | 1.0 |
| GJGNLFEO_43 | 1.0 | 0.0 | 1.0 |
| GJGNLFEO_44 | 1.0 | 0.0 | 1.0 |
| GJGNLFEO_45 | 0.0 | 1.0 | 0.0 |
| GJGNLFEO_46 | 1.0 | 0.0 | 1.0 |
| GJGNLFEO_47 | 1.0 | 0.0 | 1.0 |
| GJGNLFEO_48 | 1.0 | 0.0 | 1.0 |
| GJGNLFEO_49 | 1.0 | 0.0 | 1.0 |
| GJGNLFEO_50 | 0.0 | 1.0 | 0.0 |
| GJGNLFEO_51 | 1.0 | 0.0 | 1.0 |
| GJGNLFEO_53 | 1.0 | 0.0 | 1.0 |
| GJGNLFEO_54 | 1.0 | 0.0 | 1.0 |
| GJGNLFEO_55 | 1.0 | 0.0 | 1.0 |
| GJGNLFEO_56 | 0.0 | 1.0 | 0.0 |
| GJGNLFEO_57 | 1.0 | 0.0 | 1.0 |
| GJGNLFEO_58 | 1.0 | 0.0 | 1.0 |
| GJGNLFEO_59 | 1.0 | 0.0 | 1.0 |
| GJGNLFEO_60 | 1.0 | 0.0 | 1.0 |
| GJGNLFEO_61 | 1.0 | 0.0 | 1.0 |
| GJGNLFEO_67 | 0.0 | 1.0 | 0.0 |
| GJGNLFEO_72 | 0.0 | 1.0 | 0.0 |
| GJGNLFEO_73 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GJGNLFEO_1 | 8883 | 48891 | False | Siphoviridae | VOG7581, VOG6463, VOG4552, VOG4891, VOG0181, VOG10867, VOG4967, VOG3642, VOG0321, VOG0322, VOG0226, VOG4566, VOG0189, VOG6237, VOG7018, VOG9860, VOG4693, VOG9741, VOG0195, VOG0275, VOG4643, VOG0152, VOG3643, VOG1183, VOG1563, VOG0198, VOG4570, VOG10904, VOG4549, VOG6947, VOG4841, VOG4581, VOG4544, VOG3644, VOG4556, VOG4568, VOG4553, VOG5601, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG6163, VOG4605, VOG4599, VOG10016, VOG10957, VOG4705, VOG1637, VOG0703, VOG4918 |
| GJGNLFEO_7 | 69691 | 72477 | False | Siphoviridae | VOG10059, VOG0181, VOG10867 |
Phigaro v2.4.0 (Database: Jan. 2024 release)