Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KCPCBIJB_67 | 112960 | 113664 | WalR | 6.64e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| KCPCBIJB_16 | 6755 | 6949 | CspR | 9.29e-31 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| KCPCBIJB_16 | 6755 | 6952 | CspA | 1.42e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| KCPCBIJB_79 | 11630 | 12669 | rep38 | 1042 / 1104 | 88.58 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KCPCBIJB_1 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_2 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_3 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_4 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_5 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_6 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_7 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_8 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_9 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_10 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_11 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_12 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_13 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_14 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_15 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_16 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_17 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_18 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_19 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_20 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_21 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_22 | 1.0 | 0.0 | 1.0 |
| KCPCBIJB_23 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_24 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_25 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_26 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_27 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_28 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_29 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_30 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_31 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_32 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_33 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_34 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_35 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_36 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_37 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_38 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_39 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_40 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_41 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_42 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_43 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_44 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_45 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_46 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_47 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_48 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_49 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_50 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_51 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_52 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_53 | 1.0 | 0.0 | 1.0 |
| KCPCBIJB_54 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_55 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_56 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_57 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_58 | 1.0 | 0.0 | 1.0 |
| KCPCBIJB_59 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_60 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_61 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_62 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_63 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_64 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_65 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_66 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_67 | 0.0 | 1.0 | 0.0 |
| KCPCBIJB_69 | 1.0 | 0.0 | 1.0 |
| KCPCBIJB_70 | 1.0 | 0.0 | 1.0 |
| KCPCBIJB_71 | 1.0 | 0.0 | 1.0 |
| KCPCBIJB_72 | 1.0 | 0.0 | 1.0 |
| KCPCBIJB_73 | 1.0 | 0.0 | 1.0 |
| KCPCBIJB_74 | 1.0 | 0.0 | 1.0 |
| KCPCBIJB_75 | 1.0 | 0.0 | 1.0 |
| KCPCBIJB_76 | 1.0 | 0.0 | 1.0 |
| KCPCBIJB_77 | 1.0 | 0.0 | 1.0 |
| KCPCBIJB_78 | 1.0 | 0.0 | 1.0 |
| KCPCBIJB_79 | 1.0 | 0.0 | 1.0 |
| KCPCBIJB_80 | 1.0 | 0.0 | 1.0 |
| KCPCBIJB_81 | 1.0 | 0.0 | 1.0 |
| KCPCBIJB_82 | 1.0 | 0.0 | 1.0 |
| KCPCBIJB_83 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KCPCBIJB_9 | 24006 | 57380 | False | Siphoviridae | VOG4602, VOG8520, VOG1563, VOG4552, VOG8222, VOG8925, VOG0321, VOG4548, VOG10904, VOG0322, VOG6545, VOG4632, VOG4609, VOG4609, VOG0327, VOG0195, VOG3643, VOG4673, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG8917 |
| KCPCBIJB_23 | 3942 | 31976 | False | Siphoviridae | VOG3643, VOG0634, VOG0044, VOG3643, VOG0198, VOG4841, VOG0468, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG4545, VOG4605, VOG4599, VOG10957, VOG8870, VOG9998, VOG8294 |
| KCPCBIJB_37 | 82915 | 112307 | False | Siphoviridae | VOG1637, VOG8294, VOG9531, VOG4619, VOG0801, VOG4910, VOG0701, VOG9763, VOG0698, VOG0697, VOG0696, VOG0695, VOG4572, VOG4555, VOG0692, VOG0691, VOG4544, VOG0796, VOG0638, VOG0143, VOG0198, VOG3643, VOG0044, VOG4693, VOG4566 |
| KCPCBIJB_38 | 3079 | 32174 | False | Siphoviridae | VOG8294, VOG9531, VOG4619, VOG0801, VOG4910, VOG0701, VOG9763, VOG0698, VOG0697, VOG0696, VOG0695, VOG4572, VOG4555, VOG0692, VOG0691, VOG4544, VOG0796, VOG0638, VOG0143, VOG0198, VOG3643, VOG0044, VOG4693, VOG4566 |
Phigaro v2.4.0 (Database: Jan. 2024 release)