Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 2 | 1 | 3.74 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LEAHNCHJ_99 | 33961 | 34698 | ErmB | ARO:3000375 | ErmB | 99.18 | 98.79 | AF242872.1 |
| LEAHNCHJ_155 | 14679 | 15302 | catS | ARO:3002688 | catS | 85.98 | 126.22 | X74948.1 |
| LEAHNCHJ_173 | 3771 | 5690 | tet(W) | ARO:3000194 | tet(W) | 99.84 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LEAHNCHJ_99 | 33961 | 34698 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | X72021 |
| LEAHNCHJ_173 | 3771 | 5690 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.90 | 100.00 | AJ427422 |
| LEAHNCHJ_155 | 14766 | 15302 | catS | Chloramphenicol | 89.20 | 100.00 | X74948 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LEAHNCHJ_99 | 33961 | 34695 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | EXACTX | 100.00 | 100.00 | WP_001038795.1 |
| LEAHNCHJ_173 | 3771 | 5687 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.84 | 100.00 | WP_002586627.1 |
| LEAHNCHJ_155 | 14679 | 15296 | catP | type A-11 chloramphenicol O-acetyltransferase CatP | BLASTX | 81.07 | 99.52 | WP_002570989.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| LEAHNCHJ_14 | 1 | 1363 | fbp54 | 0.0 | FBPs | Adherence | 99.41 | 82.16 | WP_011227179 |
| LEAHNCHJ_24 | 1 | 903 | cshA | 0.0 | Cell surface hydrophobicity proteins | Adherence | 99.34 | 78.93 | - |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LEAHNCHJ_83 | 1120 | 452 | CovR | 1.15e-128 | serves to repress GAS virulence factor-encoding genes | 80.72 | 97.37 | ACE75886 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LEAHNCHJ_1 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_2 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_3 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_4 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_5 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_6 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_7 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_8 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_9 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_10 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_11 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_12 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_13 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_14 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_15 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_16 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_17 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_18 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_19 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_20 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_21 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_22 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_23 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_24 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_25 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_26 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_27 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_28 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_29 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_30 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_31 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_32 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_33 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_34 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_35 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_36 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_37 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_38 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_39 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_40 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_41 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_42 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_43 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_44 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_45 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_46 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_47 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_48 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_49 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_50 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_51 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_52 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_53 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_54 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_55 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_56 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_57 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_58 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_59 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_60 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_61 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_62 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_63 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_64 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_65 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_66 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_67 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_68 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_69 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_70 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_71 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_72 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_73 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_74 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_75 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_76 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_77 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_78 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_79 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_80 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_81 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_82 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_83 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_84 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_85 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_86 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_88 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_89 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_90 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_91 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_92 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_93 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_94 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_95 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_96 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_97 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_98 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_99 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_100 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_101 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_102 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_103 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_104 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_105 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_107 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_108 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_109 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_110 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_111 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_112 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_113 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_114 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_115 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_116 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_117 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_118 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_119 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_120 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_121 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_122 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_123 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_124 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_125 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_126 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_127 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_128 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_129 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_130 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_131 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_132 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_133 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_134 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_135 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_136 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_137 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_138 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_139 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_140 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_141 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_142 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_143 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_144 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_145 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_146 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_147 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_148 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_149 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_150 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_151 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_152 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_153 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_154 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_155 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_156 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_157 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_158 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_159 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_160 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_161 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_162 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_163 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_164 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_165 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_166 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_167 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_168 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_169 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_170 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_171 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_172 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_173 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_174 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_175 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_176 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_177 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_178 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_179 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_180 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_181 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_182 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_183 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_184 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_185 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_186 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_188 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_189 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_190 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_191 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_192 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_193 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_194 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_195 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_196 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_197 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_198 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_199 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_200 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_201 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_202 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_203 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_204 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_205 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_206 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_207 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_208 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_209 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_210 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_211 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_212 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_213 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_214 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_215 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_216 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_217 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_218 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_219 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_220 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_221 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_222 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_223 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_224 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_225 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_226 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_227 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_228 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_229 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_230 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_231 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_232 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_233 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_234 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_235 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_236 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_237 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_238 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_239 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_240 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_241 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_242 | 1.0 | 0.0 | 1.0 |
| LEAHNCHJ_243 | 0.0 | 1.0 | 0.0 |
| LEAHNCHJ_244 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LEAHNCHJ_167 | 157792 | 174672 | False | Myoviridae | VOG6585, |
| LEAHNCHJ_178 | 112415 | 119656 | False | Unknown | VOG4606, |
| LEAHNCHJ_200 | 63160 | 71072 | False | Unknown | VOG4004, |
| LEAHNCHJ_244 | 34359 | 40705 | False | Myoviridae | / |
Phigaro v2.4.0 (Database: Jan. 2024 release)