Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NGDIILCE_55 | 138518 | 139255 | ErmB | ARO:3000375 | ErmB | 98.78 | 98.79 | AF242872.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NGDIILCE_55 | 138518 | 139255 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | U18931 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NGDIILCE_55 | 138521 | 139255 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | EXACTX | 100.00 | 100.00 | WP_002292226.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NGDIILCE_1 | 0.0 | 1.0 | 0.0 |
| NGDIILCE_2 | 0.0 | 1.0 | 0.0 |
| NGDIILCE_3 | 0.0 | 1.0 | 0.0 |
| NGDIILCE_4 | 0.0 | 1.0 | 0.0 |
| NGDIILCE_5 | 0.0 | 1.0 | 0.0 |
| NGDIILCE_6 | 0.0 | 1.0 | 0.0 |
| NGDIILCE_7 | 0.0 | 1.0 | 0.0 |
| NGDIILCE_8 | 0.0 | 1.0 | 0.0 |
| NGDIILCE_9 | 0.0 | 1.0 | 0.0 |
| NGDIILCE_10 | 0.0 | 1.0 | 0.0 |
| NGDIILCE_11 | 0.0 | 1.0 | 0.0 |
| NGDIILCE_12 | 0.0 | 1.0 | 0.0 |
| NGDIILCE_13 | 0.0 | 1.0 | 0.0 |
| NGDIILCE_14 | 0.0 | 1.0 | 0.0 |
| NGDIILCE_15 | 0.0 | 1.0 | 0.0 |
| NGDIILCE_16 | 0.0 | 1.0 | 0.0 |
| NGDIILCE_17 | 1.0 | 0.0 | 1.0 |
| NGDIILCE_18 | 0.0 | 1.0 | 0.0 |
| NGDIILCE_19 | 0.0 | 1.0 | 0.0 |
| NGDIILCE_20 | 0.0 | 1.0 | 0.0 |
| NGDIILCE_21 | 0.0 | 1.0 | 0.0 |
| NGDIILCE_22 | 0.0 | 1.0 | 0.0 |
| NGDIILCE_23 | 0.0 | 1.0 | 0.0 |
| NGDIILCE_25 | 1.0 | 0.0 | 1.0 |
| NGDIILCE_26 | 0.0 | 1.0 | 0.0 |
| NGDIILCE_27 | 0.0 | 1.0 | 0.0 |
| NGDIILCE_28 | 0.0 | 1.0 | 0.0 |
| NGDIILCE_29 | 0.0 | 1.0 | 0.0 |
| NGDIILCE_30 | 1.0 | 0.0 | 1.0 |
| NGDIILCE_31 | 1.0 | 0.0 | 1.0 |
| NGDIILCE_32 | 0.0 | 1.0 | 0.0 |
| NGDIILCE_33 | 0.0 | 1.0 | 0.0 |
| NGDIILCE_34 | 1.0 | 0.0 | 1.0 |
| NGDIILCE_35 | 1.0 | 0.0 | 1.0 |
| NGDIILCE_36 | 1.0 | 0.0 | 1.0 |
| NGDIILCE_37 | 1.0 | 0.0 | 1.0 |
| NGDIILCE_38 | 0.0 | 1.0 | 0.0 |
| NGDIILCE_39 | 1.0 | 0.0 | 1.0 |
| NGDIILCE_40 | 1.0 | 0.0 | 1.0 |
| NGDIILCE_41 | 1.0 | 0.0 | 1.0 |
| NGDIILCE_42 | 0.0 | 1.0 | 0.0 |
| NGDIILCE_43 | 0.0 | 1.0 | 0.0 |
| NGDIILCE_44 | 0.0 | 1.0 | 0.0 |
| NGDIILCE_45 | 0.0 | 1.0 | 0.0 |
| NGDIILCE_46 | 1.0 | 0.0 | 1.0 |
| NGDIILCE_47 | 0.0 | 1.0 | 0.0 |
| NGDIILCE_48 | 1.0 | 0.0 | 1.0 |
| NGDIILCE_49 | 1.0 | 0.0 | 1.0 |
| NGDIILCE_50 | 0.0 | 1.0 | 0.0 |
| NGDIILCE_51 | 1.0 | 0.0 | 1.0 |
| NGDIILCE_52 | 0.0 | 1.0 | 0.0 |
| NGDIILCE_53 | 1.0 | 0.0 | 1.0 |
| NGDIILCE_54 | 1.0 | 0.0 | 1.0 |
| NGDIILCE_55 | 0.0 | 1.0 | 0.0 |
| NGDIILCE_56 | 1.0 | 0.0 | 1.0 |
| NGDIILCE_57 | 1.0 | 0.0 | 1.0 |
| NGDIILCE_58 | 1.0 | 0.0 | 1.0 |
| NGDIILCE_59 | 1.0 | 0.0 | 1.0 |
| NGDIILCE_60 | 1.0 | 0.0 | 1.0 |
| NGDIILCE_61 | 1.0 | 0.0 | 1.0 |
| NGDIILCE_62 | 1.0 | 0.0 | 1.0 |
| NGDIILCE_63 | 1.0 | 0.0 | 1.0 |
| NGDIILCE_64 | 0.0 | 1.0 | 0.0 |
| NGDIILCE_65 | 1.0 | 0.0 | 1.0 |
| NGDIILCE_66 | 0.0 | 1.0 | 0.0 |
| NGDIILCE_67 | 1.0 | 0.0 | 1.0 |
| NGDIILCE_68 | 0.0 | 1.0 | 0.0 |
| NGDIILCE_69 | 0.0 | 1.0 | 0.0 |
| NGDIILCE_70 | 1.0 | 0.0 | 1.0 |
| NGDIILCE_71 | 0.0 | 1.0 | 0.0 |
| NGDIILCE_72 | 0.0 | 1.0 | 0.0 |
| NGDIILCE_73 | 1.0 | 0.0 | 1.0 |
| NGDIILCE_74 | 1.0 | 0.0 | 1.0 |
| NGDIILCE_75 | 1.0 | 0.0 | 1.0 |
| NGDIILCE_76 | 0.0 | 1.0 | 0.0 |
| NGDIILCE_77 | 0.0 | 1.0 | 0.0 |
| NGDIILCE_78 | 1.0 | 0.0 | 1.0 |
| NGDIILCE_79 | 1.0 | 0.0 | 1.0 |
| NGDIILCE_80 | 1.0 | 0.0 | 1.0 |
| NGDIILCE_81 | 1.0 | 0.0 | 1.0 |
| NGDIILCE_82 | 0.0 | 1.0 | 0.0 |
| NGDIILCE_83 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NGDIILCE_11 | 62376 | 91101 | False | Myoviridae | VOG0979, |
| NGDIILCE_22 | 164521 | 178060 | False | Myoviridae | VOG6495, |
| NGDIILCE_33 | 142640 | 149541 | True | Unknown | VOG4566, |
| NGDIILCE_55 | 138517 | 144312 | False | Siphoviridae | VOG7515, |
Phigaro v2.4.0 (Database: Jan. 2024 release)