Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KCCPGNAM_110 | 7723 | 8367 | vatE | ARO:3002844 | vatE | 97.20 | 100.00 | AF242872.1 |
| KCCPGNAM_64 | 880 | 1617 | ErmB | ARO:3000375 | ErmB | 98.37 | 98.79 | AF242872.1 |
| KCCPGNAM_127 | 680 | 2605 | tet(W) | ARO:3000194 | tet(W) | 96.87 | 100.31 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KCCPGNAM_64 | 880 | 1617 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.86 | 100.00 | U86375 |
| KCCPGNAM_127 | 680 | 2592 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.01 | 99.64 | FN396364 |
| KCCPGNAM_110 | 7723 | 8367 | vat(E) | Dalfopristin, Pristinamycin IIA, Virginiamycin M | 96.43 | 100.00 | AJ488494 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KCCPGNAM_127 | 680 | 2593 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.69 | 99.84 | WP_000691721.1 |
| KCCPGNAM_64 | 883 | 1617 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.59 | 100.00 | WP_001038790.1 |
| KCCPGNAM_110 | 7726 | 8367 | vat(E) | streptogramin A O-acetyltransferase Vat(E) | BLASTX | 99.53 | 100.00 | WP_063856929.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KCCPGNAM_2 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_3 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_4 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_5 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_10 | 1.0 | 0.0 | 1.0 |
| KCCPGNAM_11 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_13 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_14 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_15 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_16 | 1.0 | 0.0 | 1.0 |
| KCCPGNAM_17 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_18 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_19 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_20 | 1.0 | 0.0 | 1.0 |
| KCCPGNAM_21 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_23 | 1.0 | 0.0 | 1.0 |
| KCCPGNAM_27 | 1.0 | 0.0 | 1.0 |
| KCCPGNAM_44 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_48 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_49 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_50 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_53 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_54 | 1.0 | 0.0 | 1.0 |
| KCCPGNAM_55 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_57 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_58 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_59 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_60 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_61 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_62 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_63 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_64 | 1.0 | 0.0 | 1.0 |
| KCCPGNAM_67 | 1.0 | 0.0 | 1.0 |
| KCCPGNAM_68 | 1.0 | 0.0 | 1.0 |
| KCCPGNAM_69 | 1.0 | 0.0 | 1.0 |
| KCCPGNAM_70 | 1.0 | 0.0 | 1.0 |
| KCCPGNAM_71 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_72 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_73 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_74 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_75 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_76 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_77 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_78 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_79 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_80 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_81 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_83 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_84 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_85 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_86 | 1.0 | 0.0 | 1.0 |
| KCCPGNAM_87 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_88 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_89 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_90 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_91 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_92 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_95 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_96 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_97 | 1.0 | 0.0 | 1.0 |
| KCCPGNAM_98 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_100 | 1.0 | 0.0 | 1.0 |
| KCCPGNAM_101 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_102 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_103 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_104 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_105 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_106 | 1.0 | 0.0 | 1.0 |
| KCCPGNAM_107 | 1.0 | 0.0 | 1.0 |
| KCCPGNAM_108 | 1.0 | 0.0 | 1.0 |
| KCCPGNAM_109 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_110 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_111 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_115 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_116 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_119 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_120 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_121 | 1.0 | 0.0 | 1.0 |
| KCCPGNAM_122 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_124 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_125 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_126 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_127 | 1.0 | 0.0 | 1.0 |
| KCCPGNAM_128 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_130 | 1.0 | 0.0 | 1.0 |
| KCCPGNAM_131 | 1.0 | 0.0 | 1.0 |
| KCCPGNAM_132 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_133 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_134 | 1.0 | 0.0 | 1.0 |
| KCCPGNAM_136 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_137 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_138 | 1.0 | 0.0 | 1.0 |
| KCCPGNAM_139 | 0.0 | 1.0 | 0.0 |
| KCCPGNAM_140 | 1.0 | 0.0 | 1.0 |
| KCCPGNAM_141 | 1.0 | 0.0 | 1.0 |
| KCCPGNAM_142 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KCCPGNAM_105 | 16083 | 54011 | False | Myoviridae | VOG3870, VOG0862, VOG9667, VOG3622, VOG7236, VOG7225, VOG2228, VOG0321, VOG0283, VOG4566, VOG0189, VOG0275, VOG0195, VOG4579, VOG8177, VOG4693, VOG0634, VOG0198, VOG0796, VOG4544, VOG0720, VOG4564, VOG10914, VOG4711, VOG3435, VOG1353, VOG1881, VOG1883, VOG1352, VOG4699, VOG1956, VOG1433, VOG1348, VOG0573, VOG4550, VOG4691, VOG4845, VOG4763, VOG6540, VOG9945, VOG4705, VOG8917, VOG9888 |
Phigaro v2.4.0 (Database: Jan. 2024 release)