Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CGBAFENE_55 | 64549 | 64746 | CspA | 1.06e-29 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| CGBAFENE_55 | 64549 | 64743 | CspR | 1.92e-28 | cold shock protein | 84.61 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CGBAFENE_1 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_2 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_3 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_4 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_5 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_6 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_7 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_8 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_9 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_10 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_11 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_12 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_13 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_14 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_15 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_16 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_17 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_18 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_19 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_20 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_21 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_22 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_23 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_24 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_25 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_26 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_27 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_28 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_29 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_30 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_31 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_32 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_33 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_34 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_35 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_36 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_37 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_38 | 1.0 | 0.0 | 1.0 |
| CGBAFENE_39 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_40 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_41 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_42 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_43 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_44 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_45 | 1.0 | 0.0 | 1.0 |
| CGBAFENE_46 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_47 | 1.0 | 0.0 | 1.0 |
| CGBAFENE_48 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_49 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_50 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_51 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_52 | 1.0 | 0.0 | 1.0 |
| CGBAFENE_53 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_54 | 1.0 | 0.0 | 1.0 |
| CGBAFENE_55 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_56 | 1.0 | 0.0 | 1.0 |
| CGBAFENE_57 | 1.0 | 0.0 | 1.0 |
| CGBAFENE_58 | 1.0 | 0.0 | 1.0 |
| CGBAFENE_60 | 1.0 | 0.0 | 1.0 |
| CGBAFENE_61 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_62 | 1.0 | 0.0 | 1.0 |
| CGBAFENE_63 | 1.0 | 0.0 | 1.0 |
| CGBAFENE_64 | 1.0 | 0.0 | 1.0 |
| CGBAFENE_66 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_67 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_68 | 1.0 | 0.0 | 1.0 |
| CGBAFENE_69 | 1.0 | 0.0 | 1.0 |
| CGBAFENE_70 | 1.0 | 0.0 | 1.0 |
| CGBAFENE_71 | 1.0 | 0.0 | 1.0 |
| CGBAFENE_72 | 1.0 | 0.0 | 1.0 |
| CGBAFENE_74 | 1.0 | 0.0 | 1.0 |
| CGBAFENE_76 | 1.0 | 0.0 | 1.0 |
| CGBAFENE_77 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_88 | 0.0 | 1.0 | 0.0 |
| CGBAFENE_93 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CGBAFENE_22 | 69572 | 71998 | False | Unknown | VOG9997, VOG11074, VOG4687, VOG8917 |
| CGBAFENE_33 | 14820 | 32121 | False | Myoviridae | VOG8295, VOG0025, VOG6085, VOG0226, VOG0205, VOG0384, VOG0382, VOG0083, VOG5235 |
| CGBAFENE_77 | 9720 | 34555 | False | Siphoviridae | VOG0822, VOG5088, VOG0641, VOG0648, VOG4599, VOG0727, VOG4545, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1319, VOG10914, VOG4564, VOG0720, VOG10227, VOG0796, VOG6422, VOG0198 |
Phigaro v2.4.0 (Database: Jan. 2024 release)