Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MJMOMHOP_1 | 114166 | 116085 | tet(M) | ARO:3000186 | tet(M) | 94.37 | 100.00 | AB039845.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| MJMOMHOP_1 | 114166 | 116085 | tet(M) | Doxycycline, Tetracycline, Minocycline | 99.27 | 100.00 | EU182585 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MJMOMHOP_1 | 114166 | 116082 | tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 99.06 | 100.00 | WP_002364936.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MJMOMHOP_2 | 434409 | 435116 | WalR | 5.82e-115 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| MJMOMHOP_1 | 104745 | 105950 | repUS43 | 1206 / 1206 | 99.83 | CP003584 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MJMOMHOP_1 | 1.0 | 0.0 | 1.0 |
| MJMOMHOP_2 | 0.0 | 1.0 | 0.0 |
| MJMOMHOP_3 | 0.0 | 1.0 | 0.0 |
| MJMOMHOP_4 | 0.0 | 1.0 | 0.0 |
| MJMOMHOP_5 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MJMOMHOP_2 | 799333 | 802221 | False | Myoviridae | VOG6758, VOG2215, VOG3622, VOG4552 |
| MJMOMHOP_2 | 813245 | 838319 | False | Siphoviridae | VOG10418, VOG0275, VOG0195, VOG2246, VOG0198, VOG8681, VOG0638, VOG4841, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG5852, VOG6163, VOG4633, VOG4828, VOG5008, VOG5008, VOG1637 |
| MJMOMHOP_2 | 1022345 | 1054257 | False | Siphoviridae | VOG4828, VOG4633, VOG5793, VOG0701, VOG9763, VOG0698, VOG0697, VOG0696, VOG0695, VOG4555, VOG0692, VOG0691, VOG4544, VOG3699, VOG8681, VOG10597, VOG0198, VOG7235, VOG10560, VOG5878, VOG0637, VOG5545, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0321, VOG3947, VOG3478, VOG4552, VOG9667 |
| MJMOMHOP_2 | 1177685 | 1210188 | False | Siphoviridae | VOG5457, VOG8294, VOG0703, VOG1637, VOG5008, VOG5904, VOG4633, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1319, VOG10914, VOG0686, VOG0638, VOG4564, VOG0720, VOG3699, VOG8681, VOG0198, VOG7235, VOG5545, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0321, VOG6357, VOG9667 |
Phigaro v2.4.0 (Database: Jan. 2024 release)