Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GIIPGHNE_56 | 10705 | 10001 | WalR | 1.51e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| GIIPGHNE_7 | 85900 | 85706 | CspR | 4.02e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| GIIPGHNE_7 | 85900 | 85703 | CspA | 6.16e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GIIPGHNE_14 | 12561 | 13661 | repUS73 | 1101 / 1101 | 94.46 | CP002654 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GIIPGHNE_1 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_2 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_3 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_4 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_5 | 1.0 | 0.0 | 1.0 |
| GIIPGHNE_6 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_7 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_8 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_9 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_10 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_11 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_12 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_13 | 1.0 | 0.0 | 1.0 |
| GIIPGHNE_14 | 1.0 | 0.0 | 1.0 |
| GIIPGHNE_15 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_16 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_17 | 1.0 | 0.0 | 1.0 |
| GIIPGHNE_18 | 1.0 | 0.0 | 1.0 |
| GIIPGHNE_19 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_20 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_21 | 1.0 | 0.0 | 1.0 |
| GIIPGHNE_22 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_23 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_24 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_25 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_26 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_27 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_28 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_29 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_30 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_31 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_32 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_33 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_34 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_35 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_36 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_37 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_38 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_39 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_40 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_41 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_42 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_43 | 1.0 | 0.0 | 1.0 |
| GIIPGHNE_44 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_45 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_46 | 1.0 | 0.0 | 1.0 |
| GIIPGHNE_47 | 1.0 | 0.0 | 1.0 |
| GIIPGHNE_48 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_49 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_50 | 1.0 | 0.0 | 1.0 |
| GIIPGHNE_51 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_52 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_53 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_54 | 1.0 | 0.0 | 1.0 |
| GIIPGHNE_55 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_56 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_57 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_58 | 1.0 | 0.0 | 1.0 |
| GIIPGHNE_59 | 1.0 | 0.0 | 1.0 |
| GIIPGHNE_60 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_62 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_63 | 1.0 | 0.0 | 1.0 |
| GIIPGHNE_64 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_65 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_66 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_67 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_68 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_69 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_70 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_71 | 0.0 | 1.0 | 0.0 |
| GIIPGHNE_72 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GIIPGHNE_1 | 100520 | 137201 | False | Siphoviridae | VOG4615, VOG4705, VOG10065, VOG4705, VOG1637, VOG3463, VOG4619, VOG0801, VOG4910, VOG0701, VOG9763, VOG0698, VOG0697, VOG0696, VOG0695, VOG4572, VOG4555, VOG0692, VOG0691, VOG4544, VOG0796, VOG3015, VOG0198, VOG4693, VOG4552, VOG0189, VOG5046, VOG0226, VOG0283, VOG0535, VOG0650, VOG3549, VOG3547, VOG3622, VOG9667, VOG4602, VOG4567 |
| GIIPGHNE_4 | 239646 | 268309 | False | Siphoviridae | VOG9998, VOG8870, VOG10957, VOG4599, VOG4605, VOG5904, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0198, VOG1049, VOG3643, VOG7416, VOG0044, VOG10015, VOG0189 |
| GIIPGHNE_56 | 11947 | 22846 | False | Siphoviridae | VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609 |
Phigaro v2.4.0 (Database: Jan. 2024 release)