Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| INGGAAHG_23 | 149777 | 149073 | WalR | 1.29e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| INGGAAHG_12 | 6903 | 7097 | CspR | 5.20e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| INGGAAHG_12 | 6903 | 7100 | CspA | 7.97e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| INGGAAHG_20 | 1105 | 2034 | rep28 | 930 / 930 | 98.49 | CP003162 |
| INGGAAHG_62 | 733 | 1398 | repUS53 | 667 / 666 | 86.96 | AY425961 |
| INGGAAHG_37 | 1 | 727 | repUS64 | 731 / 954 | 85.77 | JN601038 |
| INGGAAHG_68 | 5362 | 6038 | repUS75 | 679 / 1059 | 84.54 | CP002393 |
| INGGAAHG_57 | 5875 | 6532 | rep38 | 663 / 903 | 84.31 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| INGGAAHG_1 | 0.0 | 1.0 | 0.0 |
| INGGAAHG_2 | 0.0 | 1.0 | 0.0 |
| INGGAAHG_3 | 0.0 | 1.0 | 0.0 |
| INGGAAHG_4 | 0.0 | 1.0 | 0.0 |
| INGGAAHG_5 | 0.0 | 1.0 | 0.0 |
| INGGAAHG_6 | 1.0 | 0.0 | 1.0 |
| INGGAAHG_7 | 0.0 | 1.0 | 0.0 |
| INGGAAHG_8 | 1.0 | 0.0 | 1.0 |
| INGGAAHG_9 | 1.0 | 0.0 | 1.0 |
| INGGAAHG_10 | 1.0 | 0.0 | 1.0 |
| INGGAAHG_11 | 0.0 | 1.0 | 0.0 |
| INGGAAHG_12 | 0.0 | 1.0 | 0.0 |
| INGGAAHG_13 | 0.0 | 1.0 | 0.0 |
| INGGAAHG_14 | 0.0 | 1.0 | 0.0 |
| INGGAAHG_15 | 0.0 | 1.0 | 0.0 |
| INGGAAHG_16 | 1.0 | 0.0 | 1.0 |
| INGGAAHG_17 | 0.0 | 1.0 | 0.0 |
| INGGAAHG_18 | 1.0 | 0.0 | 1.0 |
| INGGAAHG_19 | 1.0 | 0.0 | 1.0 |
| INGGAAHG_20 | 1.0 | 0.0 | 1.0 |
| INGGAAHG_21 | 0.0 | 1.0 | 0.0 |
| INGGAAHG_22 | 1.0 | 0.0 | 1.0 |
| INGGAAHG_23 | 0.0 | 1.0 | 0.0 |
| INGGAAHG_24 | 1.0 | 0.0 | 1.0 |
| INGGAAHG_25 | 0.0 | 1.0 | 0.0 |
| INGGAAHG_26 | 0.0 | 1.0 | 0.0 |
| INGGAAHG_27 | 1.0 | 0.0 | 1.0 |
| INGGAAHG_28 | 1.0 | 0.0 | 1.0 |
| INGGAAHG_29 | 0.0 | 1.0 | 0.0 |
| INGGAAHG_30 | 0.0 | 1.0 | 0.0 |
| INGGAAHG_31 | 0.0 | 1.0 | 0.0 |
| INGGAAHG_32 | 0.0 | 1.0 | 0.0 |
| INGGAAHG_34 | 0.0 | 1.0 | 0.0 |
| INGGAAHG_35 | 0.0 | 1.0 | 0.0 |
| INGGAAHG_36 | 0.0 | 1.0 | 0.0 |
| INGGAAHG_37 | 1.0 | 0.0 | 1.0 |
| INGGAAHG_38 | 0.0 | 1.0 | 0.0 |
| INGGAAHG_39 | 0.0 | 1.0 | 0.0 |
| INGGAAHG_40 | 1.0 | 0.0 | 1.0 |
| INGGAAHG_41 | 0.0 | 1.0 | 0.0 |
| INGGAAHG_42 | 0.0 | 1.0 | 0.0 |
| INGGAAHG_43 | 0.0 | 1.0 | 0.0 |
| INGGAAHG_44 | 0.0 | 1.0 | 0.0 |
| INGGAAHG_45 | 0.0 | 1.0 | 0.0 |
| INGGAAHG_46 | 0.0 | 1.0 | 0.0 |
| INGGAAHG_47 | 0.0 | 1.0 | 0.0 |
| INGGAAHG_48 | 0.0 | 1.0 | 0.0 |
| INGGAAHG_49 | 0.0 | 1.0 | 0.0 |
| INGGAAHG_50 | 0.0 | 1.0 | 0.0 |
| INGGAAHG_51 | 0.0 | 1.0 | 0.0 |
| INGGAAHG_52 | 0.0 | 1.0 | 0.0 |
| INGGAAHG_53 | 0.0 | 1.0 | 0.0 |
| INGGAAHG_54 | 1.0 | 0.0 | 1.0 |
| INGGAAHG_55 | 0.0 | 1.0 | 0.0 |
| INGGAAHG_56 | 1.0 | 0.0 | 1.0 |
| INGGAAHG_57 | 1.0 | 0.0 | 1.0 |
| INGGAAHG_58 | 0.0 | 1.0 | 0.0 |
| INGGAAHG_59 | 0.0 | 1.0 | 0.0 |
| INGGAAHG_60 | 0.0 | 1.0 | 0.0 |
| INGGAAHG_61 | 0.0 | 1.0 | 0.0 |
| INGGAAHG_62 | 1.0 | 0.0 | 1.0 |
| INGGAAHG_63 | 0.0 | 1.0 | 0.0 |
| INGGAAHG_64 | 0.0 | 1.0 | 0.0 |
| INGGAAHG_65 | 1.0 | 0.0 | 1.0 |
| INGGAAHG_66 | 0.0 | 1.0 | 0.0 |
| INGGAAHG_67 | 0.0 | 1.0 | 0.0 |
| INGGAAHG_68 | 1.0 | 0.0 | 1.0 |
| INGGAAHG_69 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| INGGAAHG_25 | 11404 | 22238 | False | Siphoviridae | VOG0198, VOG0204, VOG4553, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205 |
| INGGAAHG_29 | 28237 | 62146 | False | Siphoviridae | VOG10059, VOG0181, VOG5073, VOG4566, VOG8647, VOG0189, VOG6005, VOG0198, VOG0531, VOG4841, VOG4581, VOG1886, VOG7540, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG9583, VOG0207, VOG4586, VOG5852, VOG0660, VOG5631, VOG4605, VOG4599, VOG10957, VOG8870, VOG9998 |
| INGGAAHG_36 | 32857 | 65414 | False | Siphoviridae | VOG0322, VOG4548, VOG3777, VOG6545, VOG4606, VOG10015, VOG0044, VOG10018, VOG4039, VOG3643, VOG10904, VOG4010, VOG0198, VOG4841, VOG4581, VOG1886, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG5904, VOG4605, VOG4599, VOG10957, VOG8870 |
| INGGAAHG_43 | 3992 | 37765 | False | Siphoviridae | VOG0198, VOG0608, VOG0686, VOG0796, VOG4544, VOG0720, VOG7038, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG1334, VOG4545, VOG1335, VOG10608, VOG3498, VOG8294, VOG1637, VOG0054, VOG5840, VOG6083, VOG0374 |
Phigaro v2.4.0 (Database: Jan. 2024 release)