Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JOMCKFII_33 | 28575 | 29279 | WalR | 2.35e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| JOMCKFII_74 | 71914 | 71720 | CspR | 3.50e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| JOMCKFII_74 | 71914 | 71717 | CspA | 5.37e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JOMCKFII_68 | 5259 | 5817 | rep38 | 560 / 903 | 93.04 | CP005943 |
| JOMCKFII_25 | 18 | 973 | repUS64 | 959 / 954 | 81.23 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JOMCKFII_1 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_2 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_3 | 1.0 | 0.0 | 1.0 |
| JOMCKFII_4 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_5 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_6 | 1.0 | 0.0 | 1.0 |
| JOMCKFII_7 | 1.0 | 0.0 | 1.0 |
| JOMCKFII_8 | 1.0 | 0.0 | 1.0 |
| JOMCKFII_9 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_10 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_11 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_12 | 1.0 | 0.0 | 1.0 |
| JOMCKFII_13 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_14 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_15 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_16 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_17 | 1.0 | 0.0 | 1.0 |
| JOMCKFII_18 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_19 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_20 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_21 | 1.0 | 0.0 | 1.0 |
| JOMCKFII_22 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_23 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_24 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_25 | 1.0 | 0.0 | 1.0 |
| JOMCKFII_26 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_27 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_28 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_29 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_30 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_31 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_32 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_33 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_34 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_35 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_36 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_37 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_38 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_39 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_40 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_41 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_42 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_43 | 1.0 | 0.0 | 1.0 |
| JOMCKFII_44 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_45 | 1.0 | 0.0 | 1.0 |
| JOMCKFII_46 | 1.0 | 0.0 | 1.0 |
| JOMCKFII_47 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_48 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_49 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_50 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_51 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_52 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_53 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_54 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_55 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_56 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_57 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_58 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_59 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_60 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_61 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_62 | 1.0 | 0.0 | 1.0 |
| JOMCKFII_63 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_64 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_65 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_66 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_67 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_68 | 1.0 | 0.0 | 1.0 |
| JOMCKFII_69 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_70 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_71 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_72 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_73 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_74 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_75 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_76 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_77 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_78 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_79 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_80 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_81 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_82 | 1.0 | 0.0 | 1.0 |
| JOMCKFII_83 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_84 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_85 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_86 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_87 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_88 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_89 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_90 | 1.0 | 0.0 | 1.0 |
| JOMCKFII_91 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_92 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_93 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_94 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_95 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_96 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_97 | 1.0 | 0.0 | 1.0 |
| JOMCKFII_98 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_99 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_100 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_101 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_102 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_103 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_104 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_105 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_106 | 1.0 | 0.0 | 1.0 |
| JOMCKFII_107 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_108 | 1.0 | 0.0 | 1.0 |
| JOMCKFII_109 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_110 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_111 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_112 | 0.0 | 1.0 | 0.0 |
| JOMCKFII_113 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JOMCKFII_42 | 76121 | 102469 | False | Siphoviridae | VOG7502, VOG0650, VOG8925, VOG0685, VOG0283, VOG0226, VOG0514, VOG4799, VOG0189, VOG4693, VOG0586, VOG0044, VOG3643, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586 |
| JOMCKFII_102 | 4781 | 24298 | False | Siphoviridae | VOG4619, VOG0801, VOG6163, VOG0701, VOG9763, VOG6548, VOG0697, VOG0696, VOG0695, VOG4711, VOG9317, VOG0692, VOG0691, VOG0796, VOG5709 |
| JOMCKFII_103 | 30319 | 62687 | False | Siphoviridae | VOG6495, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG0195, VOG0044, VOG3643, VOG4673, VOG6154, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG8917, VOG1637 |
Phigaro v2.4.0 (Database: Jan. 2024 release)