Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| COEINOPB_42 | 5340 | 5825 | lnuA | ARO:3002835 | lnuA | 97.52 | 100.00 | M14039.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| COEINOPB_42 | 5340 | 5825 | lnu(A) | Lincomycin | 98.77 | 100.00 | M14039 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| COEINOPB_42 | 5343 | 5825 | lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | EXACTX | 100.00 | 100.00 | WP_001829870.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| COEINOPB_77 | 6128 | 5934 | CspA | 4.60e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| COEINOPB_1 | 0.0 | 1.0 | 0.0 |
| COEINOPB_2 | 0.0 | 1.0 | 0.0 |
| COEINOPB_3 | 0.0 | 1.0 | 0.0 |
| COEINOPB_4 | 0.0 | 1.0 | 0.0 |
| COEINOPB_5 | 0.0 | 1.0 | 0.0 |
| COEINOPB_6 | 0.0 | 1.0 | 0.0 |
| COEINOPB_7 | 0.0 | 1.0 | 0.0 |
| COEINOPB_8 | 0.0 | 1.0 | 0.0 |
| COEINOPB_9 | 0.0 | 1.0 | 0.0 |
| COEINOPB_10 | 0.0 | 1.0 | 0.0 |
| COEINOPB_11 | 0.0 | 1.0 | 0.0 |
| COEINOPB_12 | 0.0 | 1.0 | 0.0 |
| COEINOPB_13 | 0.0 | 1.0 | 0.0 |
| COEINOPB_14 | 0.0 | 1.0 | 0.0 |
| COEINOPB_15 | 0.0 | 1.0 | 0.0 |
| COEINOPB_16 | 0.0 | 1.0 | 0.0 |
| COEINOPB_17 | 0.0 | 1.0 | 0.0 |
| COEINOPB_18 | 0.0 | 1.0 | 0.0 |
| COEINOPB_19 | 0.0 | 1.0 | 0.0 |
| COEINOPB_20 | 0.0 | 1.0 | 0.0 |
| COEINOPB_21 | 0.0 | 1.0 | 0.0 |
| COEINOPB_22 | 0.0 | 1.0 | 0.0 |
| COEINOPB_23 | 0.0 | 1.0 | 0.0 |
| COEINOPB_24 | 0.0 | 1.0 | 0.0 |
| COEINOPB_25 | 0.0 | 1.0 | 0.0 |
| COEINOPB_26 | 0.0 | 1.0 | 0.0 |
| COEINOPB_27 | 0.0 | 1.0 | 0.0 |
| COEINOPB_28 | 0.0 | 1.0 | 0.0 |
| COEINOPB_29 | 0.0 | 1.0 | 0.0 |
| COEINOPB_30 | 0.0 | 1.0 | 0.0 |
| COEINOPB_31 | 1.0 | 0.0 | 1.0 |
| COEINOPB_32 | 0.0 | 1.0 | 0.0 |
| COEINOPB_33 | 0.0 | 1.0 | 0.0 |
| COEINOPB_34 | 0.0 | 1.0 | 0.0 |
| COEINOPB_35 | 0.0 | 1.0 | 0.0 |
| COEINOPB_36 | 0.0 | 1.0 | 0.0 |
| COEINOPB_37 | 0.0 | 1.0 | 0.0 |
| COEINOPB_38 | 0.0 | 1.0 | 0.0 |
| COEINOPB_39 | 0.0 | 1.0 | 0.0 |
| COEINOPB_40 | 1.0 | 0.0 | 1.0 |
| COEINOPB_41 | 0.0 | 1.0 | 0.0 |
| COEINOPB_42 | 1.0 | 0.0 | 1.0 |
| COEINOPB_43 | 0.0 | 1.0 | 0.0 |
| COEINOPB_44 | 0.0 | 1.0 | 0.0 |
| COEINOPB_45 | 0.0 | 1.0 | 0.0 |
| COEINOPB_46 | 0.0 | 1.0 | 0.0 |
| COEINOPB_47 | 0.0 | 1.0 | 0.0 |
| COEINOPB_48 | 0.0 | 1.0 | 0.0 |
| COEINOPB_49 | 0.0 | 1.0 | 0.0 |
| COEINOPB_50 | 1.0 | 0.0 | 1.0 |
| COEINOPB_51 | 1.0 | 0.0 | 1.0 |
| COEINOPB_52 | 0.0 | 1.0 | 0.0 |
| COEINOPB_53 | 0.0 | 1.0 | 0.0 |
| COEINOPB_54 | 0.0 | 1.0 | 0.0 |
| COEINOPB_55 | 0.0 | 1.0 | 0.0 |
| COEINOPB_56 | 0.0 | 1.0 | 0.0 |
| COEINOPB_57 | 1.0 | 0.0 | 1.0 |
| COEINOPB_58 | 0.0 | 1.0 | 0.0 |
| COEINOPB_59 | 0.0 | 1.0 | 0.0 |
| COEINOPB_62 | 0.0 | 1.0 | 0.0 |
| COEINOPB_64 | 1.0 | 0.0 | 1.0 |
| COEINOPB_65 | 0.0 | 1.0 | 0.0 |
| COEINOPB_66 | 0.0 | 1.0 | 0.0 |
| COEINOPB_67 | 1.0 | 0.0 | 1.0 |
| COEINOPB_68 | 1.0 | 0.0 | 1.0 |
| COEINOPB_69 | 0.0 | 1.0 | 0.0 |
| COEINOPB_70 | 1.0 | 0.0 | 1.0 |
| COEINOPB_71 | 1.0 | 0.0 | 1.0 |
| COEINOPB_72 | 0.0 | 1.0 | 0.0 |
| COEINOPB_73 | 0.0 | 1.0 | 0.0 |
| COEINOPB_74 | 1.0 | 0.0 | 1.0 |
| COEINOPB_75 | 0.0 | 1.0 | 0.0 |
| COEINOPB_76 | 0.0 | 1.0 | 0.0 |
| COEINOPB_77 | 0.0 | 1.0 | 0.0 |
| COEINOPB_78 | 1.0 | 0.0 | 1.0 |
| COEINOPB_79 | 1.0 | 0.0 | 1.0 |
| COEINOPB_88 | 0.0 | 1.0 | 0.0 |
| COEINOPB_95 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| COEINOPB_2 | 1499 | 20250 | False | Siphoviridae | VOG2225, VOG9471, VOG6163, VOG0801, VOG3462, VOG7454, VOG5008, VOG1637, VOG0054, VOG4824, VOG8473, VOG7176 |
| COEINOPB_11 | 58029 | 86580 | True | Siphoviridae | VOG0221, VOG0221, VOG9502, VOG0641, VOG4589, VOG0204, VOG4553, VOG4553, VOG4573, VOG4556, VOG4544, VOG4571, VOG4581, VOG0198, VOG4548, VOG0327, VOG4606, VOG0026, VOG0021, VOG1047, VOG7438, VOG0052, VOG5410, VOG4548 |
| COEINOPB_11 | 102825 | 108656 | True | Siphoviridae | VOG0221, VOG0221, VOG9409, VOG0641, VOG4589, VOG0204, VOG4553 |
| COEINOPB_22 | 1006 | 12845 | False | Siphoviridae | VOG4589, VOG0204, VOG4553, VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG0866, VOG0866, VOG0686 |
| COEINOPB_22 | 19364 | 25687 | False | Siphoviridae | VOG3478, VOG2147, VOG8520, VOG0862, VOG9312, VOG4662, VOG4821 |
Phigaro v2.4.0 (Database: Jan. 2024 release)