Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 6 | 6.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EFDGKDLD_1 | 3502212 | 3501034 | tufA | 0.0 | elongation factor Tu | 85.75 | 99.49 | AHM69299 |
| EFDGKDLD_1 | 207831 | 209336 | atpA | 0.0 | ATP synthase subunit alpha | 80.08 | 100.00 | ABD31377 |
| EFDGKDLD_1 | 3556211 | 3555342 | pdxS | 3.48e-150 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| EFDGKDLD_1 | 2212908 | 2212132 | CodY | 6.24e-127 | nutrient-responsive regulator | 81.85 | 100.00 | ACJ80679 |
| EFDGKDLD_1 | 2212908 | 2212132 | codY | 3.00e-123 | global regulator and isoleucine sensor | 80.69 | 100.00 | ASW39076 |
| EFDGKDLD_1 | 2621674 | 2622243 | ClpP | 1.56e-102 | part of proteolytic complex | 83.68 | 97.44 | BAB94595 |
| EFDGKDLD_1 | 28550 | 29236 | WalR | 4.58e-102 | transcriptional regulatory protein | 80.79 | 97.44 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EFDGKDLD_1 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EFDGKDLD_1 | 1779112 | 1820177 | False | Siphoviridae | VOG6778, VOG0275, VOG4602, VOG4548, VOG0982, VOG9858, VOG9667, VOG11075, VOG6495, VOG0181, VOG1878, VOG4690, VOG8647, VOG0226, VOG4552, VOG0198, VOG0275, VOG4581, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0704, VOG4586, VOG5852, VOG6163, VOG0801, VOG3462, VOG8438, VOG6243, VOG8580, VOG0753, VOG0136, VOG4918 |
| EFDGKDLD_1 | 3415574 | 3447035 | False | Siphoviridae | VOG4660, VOG6373, VOG4619, VOG0801, VOG6163, VOG4557, VOG5660, VOG3888, VOG1581, VOG4711, VOG3210, VOG4568, VOG7708, VOG7407, VOG0611, VOG0198, VOG8445, VOG1298, VOG6440, VOG0195, VOG0536, VOG0397, VOG9996, VOG0025, VOG9600, VOG4855, VOG1309, VOG4600, VOG1878, VOG3549, VOG8241, VOG4552, VOG9667, VOG9667 |
Phigaro v2.4.0 (Database: Jan. 2024 release)