Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CCPMPJNC_66 | 49828 | 49631 | CspA | 1.57e-29 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| CCPMPJNC_66 | 49828 | 49634 | CspR | 1.33e-27 | cold shock protein | 83.08 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CCPMPJNC_11 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_13 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_14 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_15 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_16 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_17 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_18 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_19 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_20 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_21 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_22 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_23 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_24 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_25 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_26 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_27 | 1.0 | 0.0 | 1.0 |
| CCPMPJNC_28 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_29 | 1.0 | 0.0 | 1.0 |
| CCPMPJNC_30 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_31 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_32 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_33 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_34 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_35 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_36 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_37 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_38 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_39 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_40 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_41 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_42 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_43 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_44 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_45 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_46 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_47 | 1.0 | 0.0 | 1.0 |
| CCPMPJNC_48 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_49 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_50 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_51 | 1.0 | 0.0 | 1.0 |
| CCPMPJNC_52 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_53 | 1.0 | 0.0 | 1.0 |
| CCPMPJNC_54 | 1.0 | 0.0 | 1.0 |
| CCPMPJNC_55 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_56 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_57 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_58 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_59 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_60 | 1.0 | 0.0 | 1.0 |
| CCPMPJNC_61 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_62 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_63 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_64 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_65 | 1.0 | 0.0 | 1.0 |
| CCPMPJNC_66 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_67 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_68 | 1.0 | 0.0 | 1.0 |
| CCPMPJNC_69 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_70 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_71 | 1.0 | 0.0 | 1.0 |
| CCPMPJNC_72 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_73 | 1.0 | 0.0 | 1.0 |
| CCPMPJNC_74 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_75 | 1.0 | 0.0 | 1.0 |
| CCPMPJNC_76 | 1.0 | 0.0 | 1.0 |
| CCPMPJNC_77 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_78 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_79 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_80 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_82 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_83 | 1.0 | 0.0 | 1.0 |
| CCPMPJNC_84 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_85 | 1.0 | 0.0 | 1.0 |
| CCPMPJNC_86 | 1.0 | 0.0 | 1.0 |
| CCPMPJNC_87 | 1.0 | 0.0 | 1.0 |
| CCPMPJNC_88 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_89 | 1.0 | 0.0 | 1.0 |
| CCPMPJNC_90 | 1.0 | 0.0 | 1.0 |
| CCPMPJNC_91 | 1.0 | 0.0 | 1.0 |
| CCPMPJNC_92 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_94 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_95 | 1.0 | 0.0 | 1.0 |
| CCPMPJNC_96 | 1.0 | 0.0 | 1.0 |
| CCPMPJNC_97 | 1.0 | 0.0 | 1.0 |
| CCPMPJNC_98 | 1.0 | 0.0 | 1.0 |
| CCPMPJNC_99 | 0.0 | 1.0 | 0.0 |
| CCPMPJNC_100 | 1.0 | 0.0 | 1.0 |
| CCPMPJNC_102 | 1.0 | 0.0 | 1.0 |
| CCPMPJNC_103 | 1.0 | 0.0 | 1.0 |
| CCPMPJNC_110 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CCPMPJNC_27 | 5578 | 14271 | False | Unknown | VOG9667, VOG0862, VOG0275, VOG1013, VOG0249 |
| CCPMPJNC_55 | 2444 | 31388 | False | Siphoviridae | VOG2228, VOG1309, VOG0186, VOG0226, VOG4566, VOG0198, VOG6318, VOG4841, VOG4581, VOG1886, VOG10142, VOG4556, VOG4568, VOG0204, VOG0205, VOG4317, VOG0207, VOG0209, VOG6163, VOG0801, VOG3462, VOG10972, VOG10903, VOG9997, VOG4687, VOG8917, VOG9091 |
Phigaro v2.4.0 (Database: Jan. 2024 release)