Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 1 | 0 | 4.12 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LCEDCJLN_3 | 157603 | 159577 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
| LCEDCJLN_18 | 89404 | 90306 | CepA-44 | ARO:3006225 | CepA-44 | 100.00 | 100.00 | NG_050386.1 |
| LCEDCJLN_18 | 4811 | 6016 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.25 | 100.00 | AF251288.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LCEDCJLN_18 | 89404 | 90306 | cepA-44 | Unknown Beta-lactam | 100.00 | 100.00 | U05885 |
| LCEDCJLN_3 | 157603 | 159528 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LCEDCJLN_18 | 89404 | 90303 | cepA-44 | extended-spectrum class A beta-lactamase CepA-44 | ALLELEX | 100.00 | 100.00 | WP_032579291.1 |
| LCEDCJLN_18 | 4277 | 4786 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| LCEDCJLN_3 | 157606 | 159528 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| LCEDCJLN_18 | 4814 | 6016 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.25 | 100.00 | WP_063853729.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| LCEDCJLN_7 | 59569 | 60762 | bft-2 | 0.0 | BFT B. fragilis toxin, subtype 2 | Exotoxin | 100.00 | 100.00 | BAA77277 |
| LCEDCJLN_7 | 59569 | 60762 | bft-3 | 0.0 | BFT B. fragilis toxin, subtype 3 | Exotoxin | 96.90 | 100.00 | BAA77275 |
| LCEDCJLN_7 | 59569 | 60762 | bft-1 | 0.0 | BFT B. fragilis toxin, subtype 1 | Exotoxin | 94.89 | 100.00 | BAA77276 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LCEDCJLN_1 | 0.0 | 1.0 | 0.0 |
| LCEDCJLN_2 | 0.0 | 1.0 | 0.0 |
| LCEDCJLN_3 | 0.0 | 1.0 | 0.0 |
| LCEDCJLN_4 | 0.0 | 1.0 | 0.0 |
| LCEDCJLN_5 | 0.0 | 1.0 | 0.0 |
| LCEDCJLN_6 | 0.0 | 1.0 | 0.0 |
| LCEDCJLN_7 | 0.0 | 1.0 | 0.0 |
| LCEDCJLN_8 | 0.0 | 1.0 | 0.0 |
| LCEDCJLN_9 | 0.0 | 1.0 | 0.0 |
| LCEDCJLN_10 | 0.0 | 1.0 | 0.0 |
| LCEDCJLN_11 | 0.0 | 1.0 | 0.0 |
| LCEDCJLN_12 | 0.0 | 1.0 | 0.0 |
| LCEDCJLN_13 | 0.0 | 1.0 | 0.0 |
| LCEDCJLN_14 | 0.0 | 1.0 | 0.0 |
| LCEDCJLN_15 | 0.0 | 1.0 | 0.0 |
| LCEDCJLN_16 | 0.0 | 1.0 | 0.0 |
| LCEDCJLN_17 | 0.0 | 1.0 | 0.0 |
| LCEDCJLN_18 | 0.0 | 1.0 | 0.0 |
| LCEDCJLN_19 | 0.0 | 1.0 | 0.0 |
| LCEDCJLN_20 | 0.0 | 1.0 | 0.0 |
| LCEDCJLN_21 | 0.0 | 1.0 | 0.0 |
| LCEDCJLN_22 | 0.0 | 1.0 | 0.0 |
| LCEDCJLN_23 | 0.0 | 1.0 | 0.0 |
| LCEDCJLN_24 | 0.0 | 1.0 | 0.0 |
| LCEDCJLN_25 | 0.0 | 1.0 | 0.0 |
| LCEDCJLN_26 | 0.0 | 1.0 | 0.0 |
| LCEDCJLN_27 | 0.0 | 1.0 | 0.0 |
| LCEDCJLN_28 | 0.0 | 1.0 | 0.0 |
| LCEDCJLN_29 | 0.0 | 1.0 | 0.0 |
| LCEDCJLN_30 | 0.0 | 1.0 | 0.0 |
| LCEDCJLN_31 | 0.0 | 1.0 | 0.0 |
| LCEDCJLN_32 | 0.0 | 1.0 | 0.0 |
| LCEDCJLN_33 | 0.0 | 1.0 | 0.0 |
| LCEDCJLN_34 | 0.0 | 1.0 | 0.0 |
| LCEDCJLN_35 | 0.0 | 1.0 | 0.0 |
| LCEDCJLN_36 | 0.0 | 1.0 | 0.0 |
| LCEDCJLN_37 | 1.0 | 0.0 | 1.0 |
| LCEDCJLN_38 | 0.0 | 1.0 | 0.0 |
| LCEDCJLN_39 | 0.0 | 1.0 | 0.0 |
| LCEDCJLN_40 | 0.0 | 1.0 | 0.0 |
| LCEDCJLN_41 | 0.0 | 1.0 | 0.0 |
| LCEDCJLN_42 | 0.0 | 1.0 | 0.0 |
| LCEDCJLN_43 | 1.0 | 0.0 | 1.0 |
| LCEDCJLN_44 | 1.0 | 0.0 | 1.0 |
| LCEDCJLN_45 | 0.0 | 1.0 | 0.0 |
| LCEDCJLN_46 | 0.0 | 1.0 | 0.0 |
| LCEDCJLN_47 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LCEDCJLN_15 | 104939 | 113197 | False | Siphoviridae | VOG7238, |
| LCEDCJLN_17 | 36770 | 46517 | False | Unknown | VOG3003, |
Phigaro v2.4.0 (Database: Jan. 2024 release)