Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LKNPHNPM_12 | 58032 | 58739 | vanR gene in vanG cluster | ARO:3002926 | vanR_in_vanG_cl | 84.26 | 100.00 | DQ212986.1 |
| LKNPHNPM_12 | 55218 | 56042 | vanW gene in vanG cluster | ARO:3002965 | vanW_in_vanG_cl | 90.48 | 97.51 | DQ212986.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LKNPHNPM_12 | 55221 | 56039 | vanW-G | glycopeptide resistance accessory protein VanW-G | BLASTX | 90.48 | 97.15 | WP_021419095.1 |
| LKNPHNPM_12 | 58038 | 58739 | vanR-G | vancomycin resistance response regulator transcription factor VanR-G | BLASTX | 84.62 | 99.57 | WP_021418928.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LKNPHNPM_1 | 0.0 | 1.0 | 0.0 |
| LKNPHNPM_2 | 0.0 | 1.0 | 0.0 |
| LKNPHNPM_3 | 1.0 | 0.0 | 1.0 |
| LKNPHNPM_4 | 0.0 | 1.0 | 0.0 |
| LKNPHNPM_5 | 0.0 | 1.0 | 0.0 |
| LKNPHNPM_7 | 0.0 | 1.0 | 0.0 |
| LKNPHNPM_9 | 0.0 | 1.0 | 0.0 |
| LKNPHNPM_10 | 0.0 | 1.0 | 0.0 |
| LKNPHNPM_11 | 0.0 | 1.0 | 0.0 |
| LKNPHNPM_12 | 0.0 | 1.0 | 0.0 |
| LKNPHNPM_13 | 0.0 | 1.0 | 0.0 |
| LKNPHNPM_15 | 0.0 | 1.0 | 0.0 |
| LKNPHNPM_16 | 0.0 | 1.0 | 0.0 |
| LKNPHNPM_17 | 0.0 | 1.0 | 0.0 |
| LKNPHNPM_18 | 0.0 | 1.0 | 0.0 |
| LKNPHNPM_19 | 0.0 | 1.0 | 0.0 |
| LKNPHNPM_20 | 0.0 | 1.0 | 0.0 |
| LKNPHNPM_22 | 0.0 | 1.0 | 0.0 |
| LKNPHNPM_23 | 0.0 | 1.0 | 0.0 |
| LKNPHNPM_25 | 0.0 | 1.0 | 0.0 |
| LKNPHNPM_26 | 1.0 | 0.0 | 1.0 |
| LKNPHNPM_27 | 0.0 | 1.0 | 0.0 |
| LKNPHNPM_28 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LKNPHNPM_12 | 42894 | 53412 | False | Unknown | VOG8643, |
| LKNPHNPM_16 | 69909 | 82211 | False | Myoviridae | / |
| LKNPHNPM_22 | 19490 | 48866 | False | Siphoviridae | VOG6495, |
Phigaro v2.4.0 (Database: Jan. 2024 release)