Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CLIOBGNG_1 | 1518886 | 1519794 | aad(6) | ARO:3002628 | aad(6) | 100.00 | 109.42 | AY712687.1 |
| CLIOBGNG_1 | 1518347 | 1518889 | SAT-4 | ARO:3002897 | SAT-4 | 99.44 | 100.00 | U01945.1 |
| CLIOBGNG_1 | 1517460 | 1518254 | APH(3')-IIIa | ARO:3002647 | APH(3')-IIIa | 100.00 | 100.00 | CP004067.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CLIOBGNG_1 | 1518886 | 1519794 | ant(6)-Ia | Streptomycin | 100.00 | 100.00 | AF330699 |
| CLIOBGNG_1 | 1517460 | 1518254 | aph(3')-III | Kanamycin, Amikacin, Neomycin, Butirosin, Isepamicin, Lividomycin, Paromomycin, Ribostamycin | 100.00 | 100.00 | M26832 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CLIOBGNG_1 | 1518889 | 1519794 | ant(6)-Ia | aminoglycoside nucleotidyltransferase ANT(6)-Ia | EXACTX | 100.00 | 100.00 | WP_001255866.1 |
| CLIOBGNG_1 | 1517463 | 1518254 | aph(3')-IIIa | aminoglycoside O-phosphotransferase APH(3')-IIIa | EXACTX | 100.00 | 100.00 | WP_001096887.1 |
| CLIOBGNG_1 | 1518350 | 1518889 | sat4 | streptothricin N-acetyltransferase Sat4 | EXACTX | 100.00 | 100.00 | WP_000627290.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CLIOBGNG_1 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CLIOBGNG_1 | 396762 | 403641 | False | Siphoviridae | VOG5793, VOG5588, VOG5589, VOG5587, VOG4568 |
| CLIOBGNG_1 | 418571 | 445517 | False | Siphoviridae | VOG4583, VOG2038, VOG1154, VOG4544, VOG0720, VOG4576, VOG4555, VOG4553, VOG5504, VOG1581, VOG3409, VOG1159, VOG2639, VOG4557, VOG4582, VOG5793, VOG4569, VOG4599, VOG4334, VOG0933, VOG0979, VOG3298, VOG7888, VOG9502, VOG0731 |
| CLIOBGNG_1 | 505078 | 539097 | False | Siphoviridae | VOG2538, VOG2038, VOG2043, VOG6570, VOG4544, VOG6443, VOG4556, VOG4568, VOG4553, VOG1210, VOG1158, VOG1159, VOG4621, VOG4557, VOG9762, VOG4605, VOG3416, VOG0083, VOG9657, VOG9657, VOG2021, VOG6371, VOG0731, VOG9502, VOG0731 |
| CLIOBGNG_1 | 1295575 | 1311467 | False | Siphoviridae | VOG10957, VOG3416, VOG9722, VOG5793, VOG5601, VOG1791, VOG1210, VOG4572, VOG4555 |
Phigaro v2.4.0 (Database: Jan. 2024 release)