Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NOCJABMJ_32 | 12785 | 12078 | WalR | 8.18e-117 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| NOCJABMJ_12 | 10068 | 9871 | CspR | 7.74e-29 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| NOCJABMJ_12 | 10068 | 9874 | CspA | 3.78e-28 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NOCJABMJ_1 | 0.0 | 1.0 | 0.0 |
| NOCJABMJ_2 | 1.0 | 0.0 | 1.0 |
| NOCJABMJ_3 | 0.0 | 1.0 | 0.0 |
| NOCJABMJ_4 | 0.0 | 1.0 | 0.0 |
| NOCJABMJ_5 | 0.0 | 1.0 | 0.0 |
| NOCJABMJ_6 | 1.0 | 0.0 | 1.0 |
| NOCJABMJ_7 | 0.0 | 1.0 | 0.0 |
| NOCJABMJ_8 | 0.0 | 1.0 | 0.0 |
| NOCJABMJ_9 | 0.0 | 1.0 | 0.0 |
| NOCJABMJ_10 | 0.0 | 1.0 | 0.0 |
| NOCJABMJ_11 | 0.0 | 1.0 | 0.0 |
| NOCJABMJ_12 | 0.0 | 1.0 | 0.0 |
| NOCJABMJ_13 | 0.0 | 1.0 | 0.0 |
| NOCJABMJ_14 | 0.0 | 1.0 | 0.0 |
| NOCJABMJ_15 | 1.0 | 0.0 | 1.0 |
| NOCJABMJ_16 | 1.0 | 0.0 | 1.0 |
| NOCJABMJ_17 | 0.0 | 1.0 | 0.0 |
| NOCJABMJ_18 | 0.0 | 1.0 | 0.0 |
| NOCJABMJ_19 | 1.0 | 0.0 | 1.0 |
| NOCJABMJ_21 | 1.0 | 0.0 | 1.0 |
| NOCJABMJ_22 | 0.0 | 1.0 | 0.0 |
| NOCJABMJ_23 | 0.0 | 1.0 | 0.0 |
| NOCJABMJ_24 | 0.0 | 1.0 | 0.0 |
| NOCJABMJ_25 | 0.0 | 1.0 | 0.0 |
| NOCJABMJ_26 | 0.0 | 1.0 | 0.0 |
| NOCJABMJ_27 | 1.0 | 0.0 | 1.0 |
| NOCJABMJ_28 | 0.0 | 1.0 | 0.0 |
| NOCJABMJ_29 | 1.0 | 0.0 | 1.0 |
| NOCJABMJ_30 | 0.0 | 1.0 | 0.0 |
| NOCJABMJ_31 | 0.0 | 1.0 | 0.0 |
| NOCJABMJ_32 | 0.0 | 1.0 | 0.0 |
| NOCJABMJ_33 | 0.0 | 1.0 | 0.0 |
| NOCJABMJ_34 | 0.0 | 1.0 | 0.0 |
| NOCJABMJ_35 | 1.0 | 0.0 | 1.0 |
| NOCJABMJ_36 | 0.0 | 1.0 | 0.0 |
| NOCJABMJ_37 | 0.0 | 1.0 | 0.0 |
| NOCJABMJ_38 | 1.0 | 0.0 | 1.0 |
| NOCJABMJ_39 | 1.0 | 0.0 | 1.0 |
| NOCJABMJ_40 | 1.0 | 0.0 | 1.0 |
| NOCJABMJ_41 | 1.0 | 0.0 | 1.0 |
| NOCJABMJ_42 | 1.0 | 0.0 | 1.0 |
| NOCJABMJ_43 | 0.0 | 1.0 | 0.0 |
| NOCJABMJ_44 | 0.0 | 1.0 | 0.0 |
| NOCJABMJ_45 | 0.0 | 1.0 | 0.0 |
| NOCJABMJ_46 | 0.0 | 1.0 | 0.0 |
| NOCJABMJ_47 | 1.0 | 0.0 | 1.0 |
| NOCJABMJ_48 | 0.0 | 1.0 | 0.0 |
| NOCJABMJ_49 | 0.0 | 1.0 | 0.0 |
| NOCJABMJ_50 | 1.0 | 0.0 | 1.0 |
| NOCJABMJ_52 | 1.0 | 0.0 | 1.0 |
| NOCJABMJ_53 | 1.0 | 0.0 | 1.0 |
| NOCJABMJ_54 | 0.0 | 1.0 | 0.0 |
| NOCJABMJ_55 | 1.0 | 0.0 | 1.0 |
| NOCJABMJ_56 | 0.0 | 1.0 | 0.0 |
| NOCJABMJ_57 | 1.0 | 0.0 | 1.0 |
| NOCJABMJ_58 | 0.0 | 1.0 | 0.0 |
| NOCJABMJ_59 | 0.0 | 1.0 | 0.0 |
| NOCJABMJ_60 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NOCJABMJ_21 | 2239 | 16710 | False | Siphoviridae | VOG0866, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG6163 |
Phigaro v2.4.0 (Database: Jan. 2024 release)