Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PJEMCMIN_10 | 244497 | 246416 | tet(O) | ARO:3000190 | tet(O) | 99.37 | 100.00 | M18896.2 |
| PJEMCMIN_10 | 149756 | 153319 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 92.31 | 100.08 | NC_008618.1 |
| PJEMCMIN_2 | 852 | 1706 | ErmX | ARO:3000596 | ErmX | 90.14 | 100.00 | M36726.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PJEMCMIN_10 | 244497 | 246416 | tet(O) | Doxycycline, Tetracycline, Minocycline | 99.79 | 100.00 | M18896 |
| PJEMCMIN_2 | 944 | 1706 | erm(X) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.74 | 100.00 | U21300 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PJEMCMIN_10 | 244497 | 246413 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | EXACTX | 100.00 | 100.00 | WP_050824634.1 |
| PJEMCMIN_2 | 855 | 1706 | erm(X) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(X) | BLASTX | 99.65 | 100.00 | WP_011117480.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PJEMCMIN_1 | 0.0 | 1.0 | 0.0 |
| PJEMCMIN_2 | 0.0 | 1.0 | 0.0 |
| PJEMCMIN_9 | 0.0 | 1.0 | 0.0 |
| PJEMCMIN_10 | 0.0 | 1.0 | 0.0 |
| PJEMCMIN_11 | 0.0 | 1.0 | 0.0 |
| PJEMCMIN_12 | 0.0 | 1.0 | 0.0 |
| PJEMCMIN_13 | 0.0 | 1.0 | 0.0 |
| PJEMCMIN_14 | 0.0 | 1.0 | 0.0 |
| PJEMCMIN_16 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PJEMCMIN_10 | 314240 | 335009 | False | Siphoviridae | VOG6330, VOG3416, VOG9762, VOG4557, VOG4621, VOG1159, VOG1158, VOG1210, VOG4553, VOG4568, VOG4556, VOG6443, VOG4544, VOG6570, VOG2043, VOG2038, VOG2538 |
| PJEMCMIN_12 | 127296 | 148562 | False | Siphoviridae | VOG4655, VOG1125, VOG5793, VOG4582, VOG3651, VOG4557, VOG4621, VOG1159, VOG3409, VOG1581, VOG0880, VOG4553, VOG4555, VOG6302, VOG0720, VOG4544, VOG1574 |
Phigaro v2.4.0 (Database: Jan. 2024 release)