Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CPNPKOJD_96 | 45029 | 44832 | CspR | 6.09e-29 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| CPNPKOJD_96 | 45029 | 44832 | CspA | 1.13e-28 | cold shock protein | 80.30 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CPNPKOJD_1 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_2 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_3 | 1.0 | 0.0 | 1.0 |
| CPNPKOJD_4 | 1.0 | 0.0 | 1.0 |
| CPNPKOJD_5 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_13 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_22 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_23 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_24 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_25 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_26 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_27 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_28 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_29 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_30 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_31 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_32 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_33 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_34 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_35 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_36 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_37 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_38 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_39 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_40 | 1.0 | 0.0 | 1.0 |
| CPNPKOJD_41 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_42 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_43 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_44 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_45 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_46 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_47 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_48 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_49 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_50 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_51 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_52 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_53 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_54 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_55 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_56 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_57 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_58 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_59 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_60 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_61 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_62 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_63 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_64 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_65 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_66 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_67 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_68 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_69 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_70 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_71 | 1.0 | 0.0 | 1.0 |
| CPNPKOJD_72 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_73 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_74 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_75 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_76 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_77 | 1.0 | 0.0 | 1.0 |
| CPNPKOJD_79 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_80 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_81 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_82 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_83 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_84 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_85 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_86 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_87 | 1.0 | 0.0 | 1.0 |
| CPNPKOJD_88 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_89 | 1.0 | 0.0 | 1.0 |
| CPNPKOJD_90 | 1.0 | 0.0 | 1.0 |
| CPNPKOJD_91 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_92 | 1.0 | 0.0 | 1.0 |
| CPNPKOJD_93 | 1.0 | 0.0 | 1.0 |
| CPNPKOJD_94 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_95 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_96 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_97 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_98 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_99 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_100 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_101 | 1.0 | 0.0 | 1.0 |
| CPNPKOJD_102 | 1.0 | 0.0 | 1.0 |
| CPNPKOJD_103 | 1.0 | 0.0 | 1.0 |
| CPNPKOJD_104 | 1.0 | 0.0 | 1.0 |
| CPNPKOJD_105 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_106 | 1.0 | 0.0 | 1.0 |
| CPNPKOJD_107 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_108 | 1.0 | 0.0 | 1.0 |
| CPNPKOJD_109 | 1.0 | 0.0 | 1.0 |
| CPNPKOJD_110 | 1.0 | 0.0 | 1.0 |
| CPNPKOJD_111 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_112 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_113 | 1.0 | 0.0 | 1.0 |
| CPNPKOJD_114 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_115 | 0.0 | 1.0 | 0.0 |
| CPNPKOJD_116 | 1.0 | 0.0 | 1.0 |
| CPNPKOJD_117 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CPNPKOJD_1 | 51816 | 87597 | False | Siphoviridae | VOG2228, VOG0321, VOG0322, VOG4548, VOG4606, VOG0327, VOG8685, VOG3501, VOG4559, VOG4010, VOG0198, VOG3214, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG6163, VOG0801, VOG3462, VOG10972, VOG9997, VOG4856, VOG10223, VOG8917, VOG9091, VOG0703 |
Phigaro v2.4.0 (Database: Jan. 2024 release)