Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 0 | 0.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PLAAIJNM_1 | 0.0 | 1.0 | 0.0 |
| PLAAIJNM_2 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PLAAIJNM_1 | 3071 | 23783 | True | Myoviridae | VOG0083, VOG0382, VOG0384, VOG1026, VOG4357, VOG0205, VOG0226, VOG6085, VOG0025, VOG8295, VOG8916, VOG5088 |
| PLAAIJNM_1 | 310044 | 332448 | True | Myoviridae / Siphoviridae | VOG6325, VOG0198, VOG4025, VOG8353, VOG4999, VOG4632, VOG2687, VOG8241, VOG0275, VOG8916, VOG4737, VOG11075, VOG1026, VOG0083 |
| PLAAIJNM_1 | 723101 | 737523 | True | Myoviridae / Siphoviridae | VOG1279, VOG1355, VOG4624, VOG4357, VOG1026, VOG1292, VOG9967, VOG2406 |
| PLAAIJNM_1 | 778170 | 792026 | True | Siphoviridae | VOG9667, VOG6495, VOG4552, VOG2228, VOG9460, VOG1309, VOG1309, VOG0186, VOG0226, VOG4799, VOG0198, VOG5088, VOG5088, VOG4618, VOG1637, VOG7312 |
| PLAAIJNM_1 | 1355886 | 1361511 | True | Unknown | VOG11015, VOG0221, VOG0944, VOG5532, VOG0944, VOG8387 |
| PLAAIJNM_1 | 1613085 | 1646217 | True | Siphoviridae | VOG0221, VOG0221, VOG0641, VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG4571, VOG4581, VOG0198, VOG4548, VOG0327, VOG4606, VOG0026, VOG0021, VOG1047, VOG1047, VOG7438, VOG10679, VOG0052, VOG11003, VOG0822 |
Phigaro v2.4.0 (Database: Jan. 2024 release)