Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DPAIGCPJ_3 | 68307 | 69011 | WalR | 2.80e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| DPAIGCPJ_2 | 358565 | 358759 | CspR | 2.34e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| DPAIGCPJ_2 | 358565 | 358762 | CspA | 3.59e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DPAIGCPJ_1 | 0.0 | 1.0 | 0.0 |
| DPAIGCPJ_2 | 0.0 | 1.0 | 0.0 |
| DPAIGCPJ_3 | 0.0 | 1.0 | 0.0 |
| DPAIGCPJ_4 | 0.0 | 1.0 | 0.0 |
| DPAIGCPJ_5 | 0.0 | 1.0 | 0.0 |
| DPAIGCPJ_6 | 0.0 | 1.0 | 0.0 |
| DPAIGCPJ_7 | 0.0 | 1.0 | 0.0 |
| DPAIGCPJ_8 | 0.0 | 1.0 | 0.0 |
| DPAIGCPJ_9 | 0.0 | 1.0 | 0.0 |
| DPAIGCPJ_10 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DPAIGCPJ_1 | 71695 | 81442 | False | Siphoviridae | VOG4602, VOG8520, VOG0787, VOG1638, VOG1563, VOG8222, VOG0181, VOG8925, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609 |
| DPAIGCPJ_1 | 87737 | 112681 | False | Siphoviridae | VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG9997, VOG8917, VOG9888, VOG0602, VOG4918, VOG6422, VOG1521, VOG1191 |
| DPAIGCPJ_4 | 289715 | 322613 | False | Siphoviridae | VOG7298, VOG9708, VOG0283, VOG5046, VOG0189, VOG4693, VOG0198, VOG0418, VOG0686, VOG0796, VOG4544, VOG0720, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG4545, VOG1335, VOG10608, VOG10944, VOG3498, VOG8294 |
Phigaro v2.4.0 (Database: Jan. 2024 release)