Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NBJKIKJI_1 | 233212 | 234432 | tet(40) | ARO:3000567 | tet(40) | 98.03 | 100.00 | AM419751.1 |
| NBJKIKJI_1 | 231242 | 233161 | tet(O/32/O) | ARO:3007119 | tet(O/32/O) | 95.93 | 100.00 | AJ295238.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NBJKIKJI_1 | 233212 | 234432 | tet(40) | Doxycycline, Tetracycline | 99.34 | 100.00 | AM419751 |
| NBJKIKJI_1 | 231242 | 233161 | tet(O/32/O) | Doxycycline, Tetracycline, Minocycline | 95.06 | 99.79 | AJ295238 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NBJKIKJI_1 | 233212 | 234429 | tet(40) | tetracycline efflux MFS transporter Tet(40) | BLASTX | 98.28 | 100.00 | WP_009247026.1 |
| NBJKIKJI_1 | 231242 | 233158 | tet(O/32/O) | tetracycline resistance ribosomal protection mosaic protein Tet(O/32/O) | BLASTX | 95.93 | 100.00 | WP_015573056.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NBJKIKJI_1 | 0.0 | 1.0 | 0.0 |
| NBJKIKJI_2 | 0.0 | 1.0 | 0.0 |
| NBJKIKJI_3 | 0.0 | 1.0 | 0.0 |
| NBJKIKJI_4 | 0.0 | 1.0 | 0.0 |
| NBJKIKJI_5 | 0.0 | 1.0 | 0.0 |
| NBJKIKJI_6 | 0.0 | 1.0 | 0.0 |
| NBJKIKJI_7 | 0.0 | 1.0 | 0.0 |
| NBJKIKJI_8 | 1.0 | 0.0 | 1.0 |
| NBJKIKJI_10 | 0.0 | 1.0 | 0.0 |
| NBJKIKJI_11 | 0.0 | 1.0 | 0.0 |
| NBJKIKJI_12 | 0.0 | 1.0 | 0.0 |
| NBJKIKJI_13 | 0.0 | 1.0 | 0.0 |
| NBJKIKJI_14 | 0.0 | 1.0 | 0.0 |
| NBJKIKJI_15 | 0.0 | 1.0 | 0.0 |
| NBJKIKJI_16 | 0.0 | 1.0 | 0.0 |
| NBJKIKJI_17 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NBJKIKJI_1 | 796544 | 808109 | False | Unknown | VOG0025, |
Phigaro v2.4.0 (Database: Jan. 2024 release)