Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CBJJHKKE_18 | 5888 | 7807 | tet(W) | ARO:3000194 | tet(W) | 92.63 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CBJJHKKE_18 | 5888 | 7792 | tet(O/W/O)-2 | Doxycycline, Tetracycline, Minocycline | 89.21 | 99.01 | AY196920 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CBJJHKKE_18 | 5888 | 7801 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 94.67 | 99.84 | WP_003672618.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CBJJHKKE_2 | 44912 | 45106 | CspA | 1.61e-27 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CBJJHKKE_2 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_3 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_4 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_5 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_6 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_7 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_8 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_10 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_11 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_13 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_14 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_16 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_17 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_18 | 1.0 | 0.0 | 1.0 |
| CBJJHKKE_19 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_20 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_21 | 1.0 | 0.0 | 1.0 |
| CBJJHKKE_22 | 1.0 | 0.0 | 1.0 |
| CBJJHKKE_23 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_24 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_28 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_29 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_30 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_31 | 1.0 | 0.0 | 1.0 |
| CBJJHKKE_32 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_33 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_34 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_35 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_36 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_37 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_38 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_42 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_43 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_44 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_45 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_46 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_47 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_48 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_49 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_50 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_51 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_52 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_53 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_54 | 1.0 | 0.0 | 1.0 |
| CBJJHKKE_55 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_57 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_58 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_59 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_60 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_61 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_62 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_63 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_64 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_66 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_67 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_68 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_69 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_70 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_71 | 1.0 | 0.0 | 1.0 |
| CBJJHKKE_72 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_73 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_74 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_76 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_77 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_78 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_79 | 1.0 | 0.0 | 1.0 |
| CBJJHKKE_80 | 1.0 | 0.0 | 1.0 |
| CBJJHKKE_81 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_82 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_83 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_84 | 1.0 | 0.0 | 1.0 |
| CBJJHKKE_85 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_87 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_88 | 1.0 | 0.0 | 1.0 |
| CBJJHKKE_89 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_90 | 1.0 | 0.0 | 1.0 |
| CBJJHKKE_91 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_93 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_94 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_95 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_96 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_97 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_98 | 1.0 | 0.0 | 1.0 |
| CBJJHKKE_99 | 1.0 | 0.0 | 1.0 |
| CBJJHKKE_100 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_101 | 1.0 | 0.0 | 1.0 |
| CBJJHKKE_102 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_103 | 1.0 | 0.0 | 1.0 |
| CBJJHKKE_105 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_106 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_107 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_110 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_111 | 1.0 | 0.0 | 1.0 |
| CBJJHKKE_113 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_114 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_115 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_116 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_117 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_118 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_119 | 1.0 | 0.0 | 1.0 |
| CBJJHKKE_120 | 1.0 | 0.0 | 1.0 |
| CBJJHKKE_121 | 1.0 | 0.0 | 1.0 |
| CBJJHKKE_122 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_123 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_125 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_126 | 1.0 | 0.0 | 1.0 |
| CBJJHKKE_127 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_128 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_129 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_130 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_135 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_136 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_137 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_138 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_139 | 1.0 | 0.0 | 1.0 |
| CBJJHKKE_141 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_143 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_144 | 1.0 | 0.0 | 1.0 |
| CBJJHKKE_145 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_146 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_147 | 1.0 | 0.0 | 1.0 |
| CBJJHKKE_149 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_151 | 1.0 | 0.0 | 1.0 |
| CBJJHKKE_152 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_153 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_154 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_157 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_158 | 1.0 | 0.0 | 1.0 |
| CBJJHKKE_160 | 1.0 | 0.0 | 1.0 |
| CBJJHKKE_162 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_163 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_165 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_166 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_167 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_168 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_169 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_170 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_171 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_172 | 1.0 | 0.0 | 1.0 |
| CBJJHKKE_173 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_174 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_175 | 1.0 | 0.0 | 1.0 |
| CBJJHKKE_177 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_178 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_179 | 1.0 | 0.0 | 1.0 |
| CBJJHKKE_180 | 1.0 | 0.0 | 1.0 |
| CBJJHKKE_182 | 1.0 | 0.0 | 1.0 |
| CBJJHKKE_183 | 1.0 | 0.0 | 1.0 |
| CBJJHKKE_184 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_185 | 1.0 | 0.0 | 1.0 |
| CBJJHKKE_186 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_187 | 0.0 | 1.0 | 0.0 |
| CBJJHKKE_188 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CBJJHKKE_178 | 2130 | 29305 | False | Siphoviridae | VOG0648, VOG9888, VOG10608, VOG1335, VOG1334, VOG1333, VOG4634, VOG0704, VOG1900, VOG1330, VOG4713, VOG1887, VOG3434, VOG4555, VOG4564, VOG0720, VOG4544, VOG0796, VOG9503, VOG0689, VOG9888 |
| CBJJHKKE_178 | 31002 | 39045 | False | Siphoviridae | VOG8065, VOG3307, VOG5324, VOG6214, VOG4552, VOG8276, VOG0189, VOG4799, VOG0186, VOG1309, VOG11077, VOG5721, VOG0267, VOG0267 |
| CBJJHKKE_178 | 39856 | 44550 | False | Siphoviridae | VOG1638, VOG2776, VOG4552, VOG4552, VOG9667, VOG9667 |
Phigaro v2.4.0 (Database: Jan. 2024 release)