Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GPGCJENB_18 | 24225 | 23521 | WalR | 3.20e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| GPGCJENB_11 | 15317 | 15514 | CspR | 1.91e-33 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GPGCJENB_31 | 3525 | 4586 | repUS74 | 1062 / 1062 | 99.72 | CP000424 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GPGCJENB_1 | 0.0 | 1.0 | 0.0 |
| GPGCJENB_2 | 0.0 | 1.0 | 0.0 |
| GPGCJENB_3 | 0.0 | 1.0 | 0.0 |
| GPGCJENB_4 | 0.0 | 1.0 | 0.0 |
| GPGCJENB_5 | 0.0 | 1.0 | 0.0 |
| GPGCJENB_6 | 0.0 | 1.0 | 0.0 |
| GPGCJENB_7 | 0.0 | 1.0 | 0.0 |
| GPGCJENB_8 | 0.0 | 1.0 | 0.0 |
| GPGCJENB_9 | 0.0 | 1.0 | 0.0 |
| GPGCJENB_10 | 0.0 | 1.0 | 0.0 |
| GPGCJENB_11 | 0.0 | 1.0 | 0.0 |
| GPGCJENB_12 | 0.0 | 1.0 | 0.0 |
| GPGCJENB_13 | 0.0 | 1.0 | 0.0 |
| GPGCJENB_14 | 0.0 | 1.0 | 0.0 |
| GPGCJENB_15 | 0.0 | 1.0 | 0.0 |
| GPGCJENB_16 | 0.0 | 1.0 | 0.0 |
| GPGCJENB_17 | 0.0 | 1.0 | 0.0 |
| GPGCJENB_18 | 0.0 | 1.0 | 0.0 |
| GPGCJENB_19 | 0.0 | 1.0 | 0.0 |
| GPGCJENB_20 | 0.0 | 1.0 | 0.0 |
| GPGCJENB_21 | 0.0 | 1.0 | 0.0 |
| GPGCJENB_22 | 0.0 | 1.0 | 0.0 |
| GPGCJENB_23 | 1.0 | 0.0 | 1.0 |
| GPGCJENB_24 | 0.0 | 1.0 | 0.0 |
| GPGCJENB_25 | 0.0 | 1.0 | 0.0 |
| GPGCJENB_26 | 0.0 | 1.0 | 0.0 |
| GPGCJENB_27 | 0.0 | 1.0 | 0.0 |
| GPGCJENB_28 | 1.0 | 0.0 | 1.0 |
| GPGCJENB_29 | 1.0 | 0.0 | 1.0 |
| GPGCJENB_30 | 0.0 | 1.0 | 0.0 |
| GPGCJENB_31 | 1.0 | 0.0 | 1.0 |
| GPGCJENB_32 | 1.0 | 0.0 | 1.0 |
| GPGCJENB_33 | 1.0 | 0.0 | 1.0 |
| GPGCJENB_34 | 1.0 | 0.0 | 1.0 |
| GPGCJENB_36 | 1.0 | 0.0 | 1.0 |
| GPGCJENB_37 | 0.0 | 1.0 | 0.0 |
| GPGCJENB_38 | 1.0 | 0.0 | 1.0 |
| GPGCJENB_39 | 1.0 | 0.0 | 1.0 |
| GPGCJENB_40 | 1.0 | 0.0 | 1.0 |
| GPGCJENB_41 | 1.0 | 0.0 | 1.0 |
| GPGCJENB_42 | 1.0 | 0.0 | 1.0 |
| GPGCJENB_43 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GPGCJENB_3 | 51786 | 62680 | False | Siphoviridae | VOG0204, VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG0205, VOG4606 |
| GPGCJENB_6 | 155820 | 157712 | False | Siphoviridae | VOG4799 |
| GPGCJENB_7 | 49163 | 83356 | False | Siphoviridae | VOG1246, VOG6083, VOG4918, VOG0703, VOG7017, VOG0861, VOG7896, VOG6455, VOG4599, VOG4605, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1322, VOG1887, VOG3434, VOG4555, VOG4564, VOG4564, VOG0720, VOG4544, VOG3699, VOG4570 |
| GPGCJENB_7 | 86723 | 91371 | False | Unknown | VOG0536, VOG9860, VOG0226, VOG4566, VOG0186, VOG1309 |
Phigaro v2.4.0 (Database: Jan. 2024 release)