Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NMGGPGGE_1 | 2760060 | 2760764 | WalR | 1.82e-113 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NMGGPGGE_1 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NMGGPGGE_1 | 5119 | 51025 | False | Siphoviridae | VOG8704, VOG8438, VOG8438, VOG4612, VOG4334, VOG1637, VOG0054, VOG0275, VOG0792, VOG1837, VOG4602, VOG6495, VOG3556, VOG8615, VOG1638, VOG11003, VOG6495, VOG9655, VOG3549, VOG0650, VOG1309, VOG0186, VOG4566, VOG4693, VOG0044, VOG3643, VOG0198, VOG5616, VOG0638, VOG0796, VOG10227, VOG0720, VOG4564, VOG3434, VOG1887, VOG4713, VOG0723, VOG5660, VOG0799, VOG0725, VOG1323, VOG4545, VOG0801, VOG3462, VOG3463, VOG8704, VOG8438, VOG4612, VOG4334, VOG4705, VOG1637 |
| NMGGPGGE_1 | 930615 | 964671 | False | Siphoviridae | VOG1250, VOG0535, VOG0322, VOG6545, VOG5046, VOG0189, VOG6005, VOG0198, VOG0796, VOG4544, VOG10227, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG9583, VOG0724, VOG0799, VOG0725, VOG6163, VOG4633, VOG4599, VOG4619, VOG4856, VOG9640, VOG0804, VOG4705, VOG4918, VOG0753, VOG0054, VOG0866 |
| NMGGPGGE_1 | 1088784 | 1112641 | False | Siphoviridae | VOG9998, VOG8870, VOG10957, VOG4599, VOG4605, VOG5904, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4568, VOG4556, VOG0202, VOG1886, VOG4581 |
| NMGGPGGE_1 | 1629618 | 1669592 | False | Siphoviridae | VOG0054, VOG1637, VOG8294, VOG3498, VOG10608, VOG1335, VOG4545, VOG1334, VOG1333, VOG4634, VOG0704, VOG1330, VOG4713, VOG1887, VOG3434, VOG4564, VOG0720, VOG10227, VOG0796, VOG9295, VOG3015, VOG0198, VOG1049, VOG3480, VOG4693, VOG4855, VOG0226, VOG0283, VOG0535, VOG7298, VOG0181, VOG6495, VOG11003, VOG4829, VOG6495, VOG4602, VOG7508, VOG7508 |
| NMGGPGGE_1 | 3278521 | 3287398 | False | Siphoviridae | VOG4602, VOG6495, VOG3556, VOG8615, VOG1638, VOG11003, VOG6495, VOG9655, VOG3549, VOG0650, VOG1309, VOG0186, VOG4566, VOG4693 |
Phigaro v2.4.0 (Database: Jan. 2024 release)