Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| BCGBFDJN_4 | 38223 | 38927 | WalR | 2.55e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| BCGBFDJN_22 | 6903 | 7097 | CspR | 1.22e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| BCGBFDJN_22 | 6903 | 7100 | CspA | 1.87e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| BCGBFDJN_2 | 1230 | 1964 | repUS64 | 736 / 954 | 97.01 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BCGBFDJN_1 | 1.0 | 0.0 | 1.0 |
| BCGBFDJN_2 | 1.0 | 0.0 | 1.0 |
| BCGBFDJN_3 | 1.0 | 0.0 | 1.0 |
| BCGBFDJN_4 | 0.0 | 1.0 | 0.0 |
| BCGBFDJN_5 | 0.0 | 1.0 | 0.0 |
| BCGBFDJN_6 | 0.0 | 1.0 | 0.0 |
| BCGBFDJN_7 | 0.0 | 1.0 | 0.0 |
| BCGBFDJN_9 | 0.0 | 1.0 | 0.0 |
| BCGBFDJN_10 | 0.0 | 1.0 | 0.0 |
| BCGBFDJN_11 | 1.0 | 0.0 | 1.0 |
| BCGBFDJN_12 | 0.0 | 1.0 | 0.0 |
| BCGBFDJN_13 | 0.0 | 1.0 | 0.0 |
| BCGBFDJN_14 | 0.0 | 1.0 | 0.0 |
| BCGBFDJN_15 | 0.0 | 1.0 | 0.0 |
| BCGBFDJN_16 | 0.0 | 1.0 | 0.0 |
| BCGBFDJN_17 | 0.0 | 1.0 | 0.0 |
| BCGBFDJN_18 | 0.0 | 1.0 | 0.0 |
| BCGBFDJN_21 | 0.0 | 1.0 | 0.0 |
| BCGBFDJN_22 | 0.0 | 1.0 | 0.0 |
| BCGBFDJN_23 | 0.0 | 1.0 | 0.0 |
| BCGBFDJN_24 | 0.0 | 1.0 | 0.0 |
| BCGBFDJN_25 | 0.0 | 1.0 | 0.0 |
| BCGBFDJN_26 | 0.0 | 1.0 | 0.0 |
| BCGBFDJN_27 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BCGBFDJN_4 | 24711 | 36980 | False | Siphoviridae | VOG4632, VOG4609, VOG6414, VOG0205, VOG4841, VOG5088, VOG4581, VOG4544, VOG2935, VOG4556, VOG4568, VOG0204 |
| BCGBFDJN_22 | 153959 | 183784 | False | Siphoviridae | VOG0685, VOG0283, VOG0226, VOG10904, VOG0514, VOG4566, VOG0189, VOG6005, VOG0198, VOG4841, VOG4581, VOG1886, VOG6939, VOG4556, VOG4568, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG10957, VOG8870 |
| BCGBFDJN_27 | 76622 | 104553 | False | Siphoviridae | VOG0602, VOG1637, VOG8917, VOG9997, VOG3498, VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844, VOG4673, VOG3643, VOG0044, VOG0327, VOG4609, VOG4632, VOG6545 |
Phigaro v2.4.0 (Database: Jan. 2024 release)