Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 1 | 4 | 5.74 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JDPNODLE_180 | 32409 | 33254 | Erm(34) | ARO:3000600 | Erm(34) | 98.58 | 100.00 | AY234334.1 |
| JDPNODLE_106 | 6675 | 7445 | ANT(4')-Ib | ARO:3003905 | ANT(4')-Ib | 94.14 | 100.00 | EF540343.1 |
| JDPNODLE_88 | 6341 | 7393 | clbC | ARO:3002816 | clbC | 97.14 | 100.00 | AP006627.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JDPNODLE_180 | 32409 | 33254 | erm(34) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.99 | 100.00 | AY234334 |
| JDPNODLE_106 | 6675 | 7445 | ant(4')-Ib | Amikacin, Tobramycin, Isepamicin, Dibekacin | 94.16 | 100.00 | AJ506108 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JDPNODLE_180 | 32409 | 33251 | erm(34) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(34) | BLASTX | 98.58 | 100.00 | WP_063844504.1 |
| JDPNODLE_88 | 6341 | 7390 | clbB | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbB | BLASTX | 97.14 | 100.00 | WP_011245929.1 |
| JDPNODLE_106 | 3359 | 4261 | blaBCL | BCL family class A beta-lactamase | BLASTX | 96.68 | 100.00 | WP_065825670.1 |
| JDPNODLE_106 | 6678 | 7445 | aadD2 | aminoglycoside O-nucleotidyltransferase ANT(4')-Ib | BLASTX | 94.14 | 100.00 | WP_035202393.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| JDPNODLE_168 | 8134 | 8784 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 97.39 | 100.00 | WP_011247375 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JDPNODLE_49 | 7352 | 8494 | tufA | 0.0 | elongation factor Tu | 87.14 | 96.19 | AHM69299 |
| JDPNODLE_35 | 5838 | 6080 | SpoVG | 8.95e-38 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| JDPNODLE_137 | 21381 | 21184 | CspA | 4.31e-31 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| JDPNODLE_93 | 18702 | 18514 | CspB | 2.27e-26 | cold shock protein | 82.54 | 95.45 | CAD00094 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JDPNODLE_3 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_4 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_5 | 1.0 | 0.0 | 1.0 |
| JDPNODLE_6 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_7 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_8 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_9 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_10 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_12 | 1.0 | 0.0 | 1.0 |
| JDPNODLE_14 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_15 | 1.0 | 0.0 | 1.0 |
| JDPNODLE_16 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_17 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_18 | 1.0 | 0.0 | 1.0 |
| JDPNODLE_20 | 1.0 | 0.0 | 1.0 |
| JDPNODLE_23 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_24 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_25 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_26 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_27 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_28 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_29 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_30 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_33 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_34 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_35 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_36 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_37 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_38 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_39 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_41 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_42 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_43 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_45 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_47 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_48 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_49 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_50 | 1.0 | 0.0 | 1.0 |
| JDPNODLE_51 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_52 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_53 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_54 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_55 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_56 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_59 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_60 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_61 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_62 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_63 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_64 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_65 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_66 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_67 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_68 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_69 | 1.0 | 0.0 | 1.0 |
| JDPNODLE_70 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_71 | 1.0 | 0.0 | 1.0 |
| JDPNODLE_72 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_73 | 1.0 | 0.0 | 1.0 |
| JDPNODLE_74 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_75 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_76 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_77 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_79 | 1.0 | 0.0 | 1.0 |
| JDPNODLE_82 | 1.0 | 0.0 | 1.0 |
| JDPNODLE_84 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_85 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_86 | 1.0 | 0.0 | 1.0 |
| JDPNODLE_87 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_88 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_89 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_90 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_91 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_92 | 1.0 | 0.0 | 1.0 |
| JDPNODLE_93 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_94 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_95 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_96 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_97 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_98 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_99 | 1.0 | 0.0 | 1.0 |
| JDPNODLE_104 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_105 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_106 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_107 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_108 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_110 | 1.0 | 0.0 | 1.0 |
| JDPNODLE_111 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_112 | 1.0 | 0.0 | 1.0 |
| JDPNODLE_113 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_115 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_116 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_117 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_120 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_121 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_122 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_123 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_124 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_125 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_126 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_128 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_129 | 1.0 | 0.0 | 1.0 |
| JDPNODLE_130 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_131 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_132 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_133 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_134 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_136 | 1.0 | 0.0 | 1.0 |
| JDPNODLE_137 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_138 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_139 | 1.0 | 0.0 | 1.0 |
| JDPNODLE_143 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_144 | 1.0 | 0.0 | 1.0 |
| JDPNODLE_145 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_146 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_147 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_148 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_149 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_150 | 1.0 | 0.0 | 1.0 |
| JDPNODLE_152 | 1.0 | 0.0 | 1.0 |
| JDPNODLE_153 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_154 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_156 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_157 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_158 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_159 | 1.0 | 0.0 | 1.0 |
| JDPNODLE_160 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_161 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_162 | 1.0 | 0.0 | 1.0 |
| JDPNODLE_163 | 1.0 | 0.0 | 1.0 |
| JDPNODLE_164 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_165 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_167 | 1.0 | 0.0 | 1.0 |
| JDPNODLE_168 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_169 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_170 | 1.0 | 0.0 | 1.0 |
| JDPNODLE_171 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_172 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_174 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_176 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_180 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_181 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_182 | 1.0 | 0.0 | 1.0 |
| JDPNODLE_184 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_186 | 1.0 | 0.0 | 1.0 |
| JDPNODLE_188 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_189 | 1.0 | 0.0 | 1.0 |
| JDPNODLE_190 | 1.0 | 0.0 | 1.0 |
| JDPNODLE_191 | 1.0 | 0.0 | 1.0 |
| JDPNODLE_192 | 1.0 | 0.0 | 1.0 |
| JDPNODLE_193 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_194 | 1.0 | 0.0 | 1.0 |
| JDPNODLE_195 | 1.0 | 0.0 | 1.0 |
| JDPNODLE_196 | 1.0 | 0.0 | 1.0 |
| JDPNODLE_197 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_198 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_199 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_200 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_201 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_202 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_203 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_204 | 1.0 | 0.0 | 1.0 |
| JDPNODLE_205 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_206 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_207 | 1.0 | 0.0 | 1.0 |
| JDPNODLE_212 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_213 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_214 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_215 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_216 | 1.0 | 0.0 | 1.0 |
| JDPNODLE_220 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_221 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_222 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_223 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_224 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_225 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_226 | 1.0 | 0.0 | 1.0 |
| JDPNODLE_227 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_228 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_232 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_233 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_234 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_235 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_236 | 1.0 | 0.0 | 1.0 |
| JDPNODLE_237 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_238 | 1.0 | 0.0 | 1.0 |
| JDPNODLE_239 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_240 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_241 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_242 | 0.0 | 1.0 | 0.0 |
| JDPNODLE_243 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)