Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HLHFFEPM_35 | 5482 | 5288 | CspA | 2.55e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HLHFFEPM_1 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_2 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_3 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_4 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_5 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_6 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_7 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_8 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_9 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_10 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_11 | 1.0 | 0.0 | 1.0 |
| HLHFFEPM_12 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_13 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_14 | 1.0 | 0.0 | 1.0 |
| HLHFFEPM_15 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_16 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_17 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_18 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_19 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_20 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_21 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_22 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_23 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_24 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_25 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_26 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_27 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_28 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_29 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_30 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_31 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_32 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_33 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_34 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_35 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_36 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_37 | 1.0 | 0.0 | 1.0 |
| HLHFFEPM_38 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_39 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_40 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_41 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_42 | 1.0 | 0.0 | 1.0 |
| HLHFFEPM_43 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_44 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_45 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_47 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_48 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_49 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_50 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_51 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_52 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_53 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_54 | 1.0 | 0.0 | 1.0 |
| HLHFFEPM_55 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_56 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_57 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_58 | 0.0 | 1.0 | 0.0 |
| HLHFFEPM_60 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HLHFFEPM_1 | 55301 | 78366 | True | Siphoviridae | VOG0221, VOG0221, VOG9502, VOG0641, VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG4571, VOG4581, VOG0198, VOG4548, VOG0327, VOG4606, VOG0026, VOG0021, VOG1047, VOG7438 |
Phigaro v2.4.0 (Database: Jan. 2024 release)