Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LKCLBMOD_68 | 65917 | 65213 | WalR | 1.63e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| LKCLBMOD_1 | 43281 | 43478 | CspR | 5.16e-33 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LKCLBMOD_1 | 0.0 | 1.0 | 0.0 |
| LKCLBMOD_2 | 0.0 | 1.0 | 0.0 |
| LKCLBMOD_4 | 0.0 | 1.0 | 0.0 |
| LKCLBMOD_5 | 0.0 | 1.0 | 0.0 |
| LKCLBMOD_7 | 0.0 | 1.0 | 0.0 |
| LKCLBMOD_8 | 0.0 | 1.0 | 0.0 |
| LKCLBMOD_9 | 0.0 | 1.0 | 0.0 |
| LKCLBMOD_10 | 0.0 | 1.0 | 0.0 |
| LKCLBMOD_11 | 0.0 | 1.0 | 0.0 |
| LKCLBMOD_12 | 0.0 | 1.0 | 0.0 |
| LKCLBMOD_13 | 0.0 | 1.0 | 0.0 |
| LKCLBMOD_14 | 0.0 | 1.0 | 0.0 |
| LKCLBMOD_15 | 0.0 | 1.0 | 0.0 |
| LKCLBMOD_16 | 0.0 | 1.0 | 0.0 |
| LKCLBMOD_17 | 0.0 | 1.0 | 0.0 |
| LKCLBMOD_18 | 0.0 | 1.0 | 0.0 |
| LKCLBMOD_19 | 0.0 | 1.0 | 0.0 |
| LKCLBMOD_20 | 0.0 | 1.0 | 0.0 |
| LKCLBMOD_21 | 0.0 | 1.0 | 0.0 |
| LKCLBMOD_22 | 0.0 | 1.0 | 0.0 |
| LKCLBMOD_23 | 0.0 | 1.0 | 0.0 |
| LKCLBMOD_24 | 0.0 | 1.0 | 0.0 |
| LKCLBMOD_25 | 0.0 | 1.0 | 0.0 |
| LKCLBMOD_28 | 0.0 | 1.0 | 0.0 |
| LKCLBMOD_29 | 0.0 | 1.0 | 0.0 |
| LKCLBMOD_30 | 0.0 | 1.0 | 0.0 |
| LKCLBMOD_31 | 0.0 | 1.0 | 0.0 |
| LKCLBMOD_32 | 0.0 | 1.0 | 0.0 |
| LKCLBMOD_33 | 0.0 | 1.0 | 0.0 |
| LKCLBMOD_34 | 0.0 | 1.0 | 0.0 |
| LKCLBMOD_35 | 0.0 | 1.0 | 0.0 |
| LKCLBMOD_36 | 0.0 | 1.0 | 0.0 |
| LKCLBMOD_37 | 0.0 | 1.0 | 0.0 |
| LKCLBMOD_38 | 0.0 | 1.0 | 0.0 |
| LKCLBMOD_39 | 0.0 | 1.0 | 0.0 |
| LKCLBMOD_40 | 0.0 | 1.0 | 0.0 |
| LKCLBMOD_41 | 0.0 | 1.0 | 0.0 |
| LKCLBMOD_42 | 1.0 | 0.0 | 1.0 |
| LKCLBMOD_43 | 1.0 | 0.0 | 1.0 |
| LKCLBMOD_44 | 1.0 | 0.0 | 1.0 |
| LKCLBMOD_45 | 0.0 | 1.0 | 0.0 |
| LKCLBMOD_46 | 1.0 | 0.0 | 1.0 |
| LKCLBMOD_47 | 1.0 | 0.0 | 1.0 |
| LKCLBMOD_48 | 0.0 | 1.0 | 0.0 |
| LKCLBMOD_49 | 1.0 | 0.0 | 1.0 |
| LKCLBMOD_51 | 0.0 | 1.0 | 0.0 |
| LKCLBMOD_52 | 1.0 | 0.0 | 1.0 |
| LKCLBMOD_53 | 1.0 | 0.0 | 1.0 |
| LKCLBMOD_54 | 1.0 | 0.0 | 1.0 |
| LKCLBMOD_56 | 1.0 | 0.0 | 1.0 |
| LKCLBMOD_57 | 0.0 | 1.0 | 0.0 |
| LKCLBMOD_58 | 1.0 | 0.0 | 1.0 |
| LKCLBMOD_59 | 0.0 | 1.0 | 0.0 |
| LKCLBMOD_60 | 1.0 | 0.0 | 1.0 |
| LKCLBMOD_61 | 1.0 | 0.0 | 1.0 |
| LKCLBMOD_62 | 1.0 | 0.0 | 1.0 |
| LKCLBMOD_63 | 1.0 | 0.0 | 1.0 |
| LKCLBMOD_65 | 0.0 | 1.0 | 0.0 |
| LKCLBMOD_68 | 0.0 | 1.0 | 0.0 |
| LKCLBMOD_70 | 0.0 | 1.0 | 0.0 |
| LKCLBMOD_71 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LKCLBMOD_2 | 17027 | 29661 | False | Siphoviridae | VOG1581, VOG4632, VOG4609, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204, VOG4589 |
Phigaro v2.4.0 (Database: Jan. 2024 release)