Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JEIAABJC_6 | 25623 | 25429 | CspA | 9.33e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JEIAABJC_1 | 0.0 | 1.0 | 0.0 |
| JEIAABJC_6 | 0.0 | 1.0 | 0.0 |
| JEIAABJC_17 | 0.0 | 1.0 | 0.0 |
| JEIAABJC_27 | 0.0 | 1.0 | 0.0 |
| JEIAABJC_35 | 1.0 | 0.0 | 1.0 |
| JEIAABJC_36 | 0.0 | 1.0 | 0.0 |
| JEIAABJC_37 | 0.0 | 1.0 | 0.0 |
| JEIAABJC_38 | 0.0 | 1.0 | 0.0 |
| JEIAABJC_39 | 0.0 | 1.0 | 0.0 |
| JEIAABJC_40 | 0.0 | 1.0 | 0.0 |
| JEIAABJC_41 | 0.0 | 1.0 | 0.0 |
| JEIAABJC_42 | 0.0 | 1.0 | 0.0 |
| JEIAABJC_43 | 0.0 | 1.0 | 0.0 |
| JEIAABJC_44 | 0.0 | 1.0 | 0.0 |
| JEIAABJC_45 | 0.0 | 1.0 | 0.0 |
| JEIAABJC_46 | 1.0 | 0.0 | 1.0 |
| JEIAABJC_47 | 0.0 | 1.0 | 0.0 |
| JEIAABJC_48 | 1.0 | 0.0 | 1.0 |
| JEIAABJC_49 | 0.0 | 1.0 | 0.0 |
| JEIAABJC_50 | 1.0 | 0.0 | 1.0 |
| JEIAABJC_51 | 1.0 | 0.0 | 1.0 |
| JEIAABJC_52 | 0.0 | 1.0 | 0.0 |
| JEIAABJC_53 | 1.0 | 0.0 | 1.0 |
| JEIAABJC_54 | 0.0 | 1.0 | 0.0 |
| JEIAABJC_55 | 0.0 | 1.0 | 0.0 |
| JEIAABJC_56 | 0.0 | 1.0 | 0.0 |
| JEIAABJC_57 | 1.0 | 0.0 | 1.0 |
| JEIAABJC_58 | 0.0 | 1.0 | 0.0 |
| JEIAABJC_59 | 0.0 | 1.0 | 0.0 |
| JEIAABJC_62 | 0.0 | 1.0 | 0.0 |
| JEIAABJC_63 | 0.0 | 1.0 | 0.0 |
| JEIAABJC_64 | 0.0 | 1.0 | 0.0 |
| JEIAABJC_67 | 0.0 | 1.0 | 0.0 |
| JEIAABJC_68 | 1.0 | 0.0 | 1.0 |
| JEIAABJC_69 | 0.0 | 1.0 | 0.0 |
| JEIAABJC_70 | 1.0 | 0.0 | 1.0 |
| JEIAABJC_71 | 1.0 | 0.0 | 1.0 |
| JEIAABJC_73 | 0.0 | 1.0 | 0.0 |
| JEIAABJC_84 | 0.0 | 1.0 | 0.0 |
| JEIAABJC_89 | 0.0 | 1.0 | 0.0 |
| JEIAABJC_91 | 0.0 | 1.0 | 0.0 |
| JEIAABJC_93 | 0.0 | 1.0 | 0.0 |
| JEIAABJC_95 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JEIAABJC_35 | 9456 | 32275 | False | Siphoviridae | VOG5560, VOG3462, VOG0801, VOG6163, VOG0209, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG1886, VOG0866, VOG9312, VOG4581, VOG4841, VOG7063, VOG0866, VOG1315, VOG0198 |
| JEIAABJC_35 | 39461 | 41537 | False | Siphoviridae | VOG5878, VOG2228, VOG8426, VOG6450, VOG3438 |
| JEIAABJC_84 | 27838 | 40706 | False | Unknown | VOG3304, VOG0862, VOG9667, VOG7581, VOG4552, VOG9667, VOG9708, VOG0283, VOG0226, VOG8647, VOG0189, VOG0536, VOG4010, VOG0451, VOG3307, VOG9500, VOG3468, VOG0198 |
| JEIAABJC_84 | 41853 | 66891 | False | Siphoviridae | VOG4618, VOG10227, VOG0720, VOG4564, VOG7513, VOG0686, VOG4555, VOG1329, VOG4713, VOG1353, VOG0724, VOG0799, VOG0725, VOG4545, VOG0801, VOG3462, VOG4775, VOG4660, VOG6281, VOG4705, VOG1637, VOG0703, VOG8294, VOG4462 |
Phigaro v2.4.0 (Database: Jan. 2024 release)