Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PBDLEHMG_12 | 310645 | 311349 | WalR | 4.16e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| PBDLEHMG_25 | 43642 | 43836 | CspR | 1.10e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| PBDLEHMG_25 | 43642 | 43839 | CspA | 1.69e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PBDLEHMG_10 | 960 | 1913 | repUS64 | 954 / 954 | 99.79 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PBDLEHMG_1 | 1.0 | 0.0 | 1.0 |
| PBDLEHMG_2 | 1.0 | 0.0 | 1.0 |
| PBDLEHMG_3 | 1.0 | 0.0 | 1.0 |
| PBDLEHMG_4 | 1.0 | 0.0 | 1.0 |
| PBDLEHMG_5 | 1.0 | 0.0 | 1.0 |
| PBDLEHMG_6 | 1.0 | 0.0 | 1.0 |
| PBDLEHMG_7 | 1.0 | 0.0 | 1.0 |
| PBDLEHMG_10 | 1.0 | 0.0 | 1.0 |
| PBDLEHMG_11 | 1.0 | 0.0 | 1.0 |
| PBDLEHMG_12 | 0.0 | 1.0 | 0.0 |
| PBDLEHMG_14 | 1.0 | 0.0 | 1.0 |
| PBDLEHMG_17 | 0.0 | 1.0 | 0.0 |
| PBDLEHMG_18 | 0.0 | 1.0 | 0.0 |
| PBDLEHMG_22 | 0.0 | 1.0 | 0.0 |
| PBDLEHMG_23 | 0.0 | 1.0 | 0.0 |
| PBDLEHMG_24 | 0.0 | 1.0 | 0.0 |
| PBDLEHMG_25 | 0.0 | 1.0 | 0.0 |
| PBDLEHMG_26 | 0.0 | 1.0 | 0.0 |
| PBDLEHMG_27 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PBDLEHMG_17 | 280229 | 287840 | False | Siphoviridae | VOG0205, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568 |
| PBDLEHMG_17 | 300511 | 334125 | False | Siphoviridae | VOG0181, VOG7298, VOG9708, VOG0283, VOG5046, VOG0189, VOG4693, VOG0198, VOG0418, VOG0686, VOG0796, VOG4544, VOG0720, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG1334, VOG4545, VOG1335, VOG10608, VOG3498, VOG8294 |
Phigaro v2.4.0 (Database: Jan. 2024 release)