Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CAHEBJCF_14 | 253387 | 252683 | WalR | 2.60e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| CAHEBJCF_6 | 43651 | 43845 | CspR | 2.52e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| CAHEBJCF_6 | 43651 | 43848 | CspA | 3.87e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CAHEBJCF_17 | 5106 | 6166 | repUS73 | 1061 / 1101 | 97.17 | CP002654 |
| CAHEBJCF_19 | 15164 | 16198 | rep38 | 1044 / 1104 | 82.57 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CAHEBJCF_1 | 0.0 | 1.0 | 0.0 |
| CAHEBJCF_2 | 0.0 | 1.0 | 0.0 |
| CAHEBJCF_3 | 0.0 | 1.0 | 0.0 |
| CAHEBJCF_4 | 0.0 | 1.0 | 0.0 |
| CAHEBJCF_5 | 0.0 | 1.0 | 0.0 |
| CAHEBJCF_6 | 0.0 | 1.0 | 0.0 |
| CAHEBJCF_8 | 0.0 | 1.0 | 0.0 |
| CAHEBJCF_11 | 0.0 | 1.0 | 0.0 |
| CAHEBJCF_12 | 0.0 | 1.0 | 0.0 |
| CAHEBJCF_13 | 0.0 | 1.0 | 0.0 |
| CAHEBJCF_14 | 0.0 | 1.0 | 0.0 |
| CAHEBJCF_15 | 0.0 | 1.0 | 0.0 |
| CAHEBJCF_16 | 0.0 | 1.0 | 0.0 |
| CAHEBJCF_17 | 1.0 | 0.0 | 1.0 |
| CAHEBJCF_18 | 1.0 | 0.0 | 1.0 |
| CAHEBJCF_19 | 1.0 | 0.0 | 1.0 |
| CAHEBJCF_20 | 1.0 | 0.0 | 1.0 |
| CAHEBJCF_21 | 0.0 | 1.0 | 0.0 |
| CAHEBJCF_22 | 1.0 | 0.0 | 1.0 |
| CAHEBJCF_23 | 1.0 | 0.0 | 1.0 |
| CAHEBJCF_24 | 1.0 | 0.0 | 1.0 |
| CAHEBJCF_25 | 0.0 | 1.0 | 0.0 |
| CAHEBJCF_28 | 1.0 | 0.0 | 1.0 |
| CAHEBJCF_29 | 1.0 | 0.0 | 1.0 |
| CAHEBJCF_30 | 1.0 | 0.0 | 1.0 |
| CAHEBJCF_32 | 0.0 | 1.0 | 0.0 |
| CAHEBJCF_36 | 0.0 | 1.0 | 0.0 |
| CAHEBJCF_38 | 0.0 | 1.0 | 0.0 |
| CAHEBJCF_42 | 0.0 | 1.0 | 0.0 |
| CAHEBJCF_46 | 0.0 | 1.0 | 0.0 |
| CAHEBJCF_49 | 0.0 | 1.0 | 0.0 |
| CAHEBJCF_50 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CAHEBJCF_25 | 329962 | 357392 | False | Siphoviridae | VOG9998, VOG8870, VOG10957, VOG4599, VOG4605, VOG6163, VOG0660, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0198, VOG4567 |
| CAHEBJCF_38 | 84170 | 137700 | False | Siphoviridae | VOG0054, VOG1637, VOG8294, VOG4705, VOG4660, VOG3463, VOG3462, VOG0801, VOG4545, VOG1323, VOG0725, VOG0799, VOG5660, VOG0723, VOG4713, VOG1887, VOG3434, VOG4564, VOG0720, VOG10227, VOG0796, VOG5616, VOG1183, VOG0198, VOG4693, VOG4552, VOG0189, VOG5046, VOG0186, VOG1309, VOG1302, VOG7298, VOG0181, VOG6495, VOG11003, VOG1638, VOG8615, VOG6139, VOG6495, VOG6495, VOG4602, VOG7656, VOG4122, VOG0275, VOG3477, VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609 |
Phigaro v2.4.0 (Database: Jan. 2024 release)